User:Wayne Decatur/Homology Modeling: Difference between revisions

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***[http://spdbv.vital-it.ch/ Swiss-PdbViewer is tightly linked to SWISS-MODEL, an automated homology modeling server developed within the Swiss Institute of Bioinformatics (SIB) at the Structural Bioinformatics Group at...] Swiss-PdbViewer is tightly linked to SWISS-MODEL, an automated homology modeling server developed within the Swiss Institute of Bioinformatics (SIB) at the Structural Bioinformatics Group at the Biozentrum in Basel.
***[http://spdbv.vital-it.ch/ Swiss-PdbViewer is tightly linked to SWISS-MODEL, an automated homology modeling server developed within the Swiss Institute of Bioinformatics (SIB) at the Structural Bioinformatics Group at...] Swiss-PdbViewer is tightly linked to SWISS-MODEL, an automated homology modeling server developed within the Swiss Institute of Bioinformatics (SIB) at the Structural Bioinformatics Group at the Biozentrum in Basel.
***[http://spdbv.vital-it.ch/TheMolecularLevel/Matics/index.html Gale Rhodes Homology modeling tutorial using Swiss PDB Viewer (DeepView)]
***[http://spdbv.vital-it.ch/TheMolecularLevel/Matics/index.html Gale Rhodes Homology modeling tutorial using Swiss PDB Viewer (DeepView)]
**[http://toolkit.tuebingen.mpg.de/hhpred# HHpred - Homology detection & structure prediction by HMM-HMM comparison] - Because homology modeling relies on identifying homologous sequences with known structure to be used as template and this serve is more sensitive at finding remote homologs, this server has been shown to perform well at template-based structure prediction.
***[http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] also allows users to calculate comparative models on demand.
***[http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] also allows users to calculate comparative models on demand.
***[http://salilab.org/modeller/ Modeller] is associated with ModBase
***[http://salilab.org/modeller/ Modeller] is associated with ModBase
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