Temperature value: Difference between revisions
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Most [[molecular modeling and visualization software]] packages have an option to color by temperature, including [[FirstGlance in Jmol]], which is linked on every page in Proteopedia that is titled with a [[PDB code]]. In [[FirstGlance in Jmol]] (version 1), this option will be found under ''More Views..'', in the section on ''Quality'', as ''Color by Uncertainty''. | Most [[molecular modeling and visualization software]] packages have an option to color by temperature, including [[FirstGlance in Jmol]], which is linked on every page in Proteopedia that is titled with a [[PDB code]]. In [[FirstGlance in Jmol]] (version 1), this option will be found under ''More Views..'', in the section on ''Quality'', as ''Color by Uncertainty''. | ||
==Missing Residues== | ==Missing Residues and Atoms== | ||
Often the very ends of chains, or surface loops, may be so disordered as to prevent assigning any atomic positions at all, leading to '''missing residues'''. That is, these residues were present in the crystallized protein, but have no coordinates in the atomic model because their electron densities were too indistinct. | Often the very ends of chains, or surface loops, may be so disordered as to prevent assigning any atomic positions at all, leading to '''missing residues'''. That is, these residues were present in the crystallized protein, but have no coordinates in the atomic model because their electron densities were too indistinct. | ||
