Nucleoprotein: Difference between revisions

===Nucleoprotein===

[[3ouo]], [[3ov9]] – NP – Rift valley fever virus<br />

[[3q7b]], [[3q7c]] – LvNP exonuclease domain – Lassa virus<br />

[[3mwp]], [[3mwt]], [[3r3l]] – LvNP<br />

[[3pto]] - VvNP – Vesicular stomatitis Indiana virus<br />

[[2qvj]] – VvNP (mutant)<br />

[[2k48]] – NP N terminal – Andes virus - NMR<br />

[[1ssk]] - ScvNP N terminal – SARS coronavirus – NMR<br />

[[4j3k]] – ScvNP N terminal<br />

[[2gib]] – ScvNP dimerization domain<br />

[[2jw8]] - ScvNP dimerization domain – NMR<br />

[[2ofz]], [[2og3]] - ScvNP RNA-binding domain<br />

[[3hd4]] – NP N terminal – Murine hepatitis virus<br />

[[2wfs]], [[2ymn]] – IvNP – Cryo EM – Influenza virus<br />

[[4dys]], [[4iry]] – IvNP <br />

[[3zdp]], [[4dyt]] – IvNP (mutant)<br />

[[2q06]], [[2iqh]], [[3tj0]] – IvNP<br />

[[2i8b]] – EvNP C terminal – Ebola virus – NMR<br />

[[3v7o]] - EvNP C terminal<br />

[[1yvr]] – XlNP Ro – ''Xenopus laevis''<br />

[[1wwf]] – MvNP P10 – Moloney murine leukemia virus – NMR<br />

[[2c86]], [[2gec]] – BvNP N terminal – Avian infectious bronchitis virus<br />

[[2ca1]], [[2ge7]], [[2ge8]] – BvNP dimerization domain<br />

[[2btl]], [[2bxx]] – BvNP RRM (mutant)<br />

[[1n93]], [[1pp1]] – NP P40 – Borna disease virus<br />

[[4aqf]], [[4aqg]] – NP N – Crimean-Congo hemorrhagic fever virus<br />

[[4fi5]] – NP N terminal – Hantaan virus<br />

[[4h5l]] – NP – Toscana virus<br />

[[4bgp]] – LcvNP – La crosse virus<br />

[[4gve]] – NP C terminal – Tacaribe virus<br />

[[4idu]], [[4idx]] – SvNP – Schmallenberg virus<br />

[[4k7e]] – NP C terminal – Junin virus<br />

''Nucleoprotein binary complex''

[[3mx2]], [[3mx5]] – LvNP + nucleotide<br />

[[3t5n]], [[3t5q]], [[4fvu]], [[4g9z]], [[4gv3]], [[4gv6]], [[4gv9]] – LvNP + RNA<br />

[[3ptx]], [[3pu0]], [[3pu1]], [[3pu4]], [[2gic]] – VvNP + RNA<br />

[[2wyy]] – VvNP + poly U – Cryo EM<br />

[[3hhw]], [[3pmk]] – VvNP + phosphoprotein<br />

[[3hhz]] - VvNP + phosphoprotein + RNA<br />

[[2wj8]], [[2yhm]], [[4bkk]] – NP + RNA – Human respiratory syncytial virus<br />

[[2i91]], [[1yvp]] – XlNP Ro + RNA <br />

[[2gtt]] – NP + RNA – Rabies virus<br />

[[1wwg]], [[1wwd]], [[1wwe]], [[1u6p]] - MvNP P10 + RNA – NMR<br />

[[3ro5]], [[4dya]], [[4dyb]], [[4dyn]], [[4dyp]], [[3tg6]] – IvNP + ligand<br />

[[4bbl]] – IvNP + RNA – Cryo EM<br />

[[3zla]] – BvNP + RNA – Bunyamwera virus<br />

[[4ijs]] – BvNP (mutant) + RNA <br />

[[4bhh]] – LcvNP + poly-U<br />

[[4jng]] – SvNP + RNA <br />

[[4j1g]], [[4j1j]] – NP + RNA – Leanye virus<br />

===Ribonucleoprotein===

[[2lbw]] – yRNP subunit 2 residues 36-156 (mutant) – yeast – NMR<br />

[[2lbx]] - yRNP subunit 2 residues 36-156 – NMR<br />

===Small nuclear ribonucleoprotein===

[[2a3j]], [[1fht]] - h-snRNP U1 A RRM – human - NMR<br />

[[2u1a]] - h-snRNP U1 A RRM (mutant) – NMR<br />

[[1dz5]] - h-snRNP U1 A  (mutant) – NMR<br />

[[1oia]] - h-snRNP U1 A RRM<br />

[[2l5i]], [[2l5j]] - h-snRNP U1 70kDa residues 131-151 – NMR<br />

[[2vy4]], [[2vy5]] - h-snRNP U11/U12 – NMR<br />

[[2cqj]] - h-snRNP U3 S4 domain – NMR<br />

[[1x4q]] - h-snRNP U4/U6 PWI domain - NMR<br />

[[2vrd]] - h-snRNP U1 C zinc finger domain - NMR<br />

[[1b34]] - h-snRNP D1 + h-snRNP D2<br />

[[1d3b]] - h-snRNP SM D3 SM motif + h-snRNP-associated protein<br />

[[1khm]] - h-snRNP K C terminal (mutant) – NMR<br />

[[2k3k]] – Dm-snRNP U1 A RRM1 – ''Drosophila melanogaster'' – NMR<br />

[[2aym]] - Dm-snRNP U1 A<br />

[[2b0g]] - Dm-snRNP U1 A RBD2 – NMR<br />

[[1n9r]], [[1n9s]] – y-snRNP F

''Small nuclear ribonucleoprotein binary complex''

[[3plu]], [[3plv]] – y-snRNP HINDI domain + ubiquitin-like modifier HUB1<br />

[[2y9a]], [[2y9b]], [[2y9c]], [[2y9d]] – h-snRNP  U4 core domain<br />  

[[3p49]] - h-snRNP A RRM + glycine riboswitch RNA<br />

[[3iwn]] - h-snRNP U1 A RRM (mutant) + riboswitch RNA<br />

[[3pgw]], [[3mum]], [[3mur]], [[3mut]], [[3muv]], [[3egz]] - h-snRNP U1 A + DNA riboswitch<br />

[[3mxh]], [[3irw]] - h-snRNP U1 A (mutant) + DNA riboswitch<br />

[[3k0j]], [[1drz]], [[1m5k]], [[1m5o]], [[1m5p]], [[1m5v]], [[1u6b]], [[3ucu]], [[3ucz]], [[3ud3]], [[3ud4]] - h-snRNP U1 A (mutant) + RNA<br />

[[3bo2]], [[3bo3]], [[3bo4]] - h-snRNP U1 A RRM + RNA<br />

[[1sj3]], [[1sj4]], [[1sjf]], [[1vbx]], [[1vby]], [[1vbz]], [[1vc0]], [[1vc5]], [[1vc6]], [[1vc7]] - h-snRNP U1 A (mutant) + Hepatitis ribozyme<br />

[[3r1h]], [[3r1l]] - h-snRNP U1 A (mutant) + ribozyme<br />

[[1aud]] - h-snRNP U1 A (mutant) + RNA - NMR<br />

[[3iin]] - h-snRNP U1 A (mutant) + group I intron + DNA<br />

[[4c4w]] - h-snRNP A RRM 1 + TSKT K-turn motif + ribosomal protein L7AE<br />

[[3b02]], [[3b03]], [[3b04]] - h-snRNP U1 A RRM1 + group I intron + RNA<br />

[[1zzn]] - h-snRNP U1 A RRM1 (mutant) + group I intron + RNA<br />

[[3l3c]], [[3g8s]], [[3g8t]], [[3g96]], [[3g9c]], [[2nz4]] - h-snRNP U1 A (mutant) + GLMS ribozyme + RNA<br />

[[3hhn]] - h-snRNP U1 A (mutant) + class I ligase ribozyme<br />

[[2oih]], [[2oj3]] - h-snRNP U1 A + HDV ribozyme<br />

[[3cul]], [[3cun]] - h-snRNP U1 A (mutant) + aminoacyl-tRNA synthetase ribozyme<br />

[[3cw1]] - h-snRNP U1 in spliceosome<br />

[[2ozb]], [[3siu]], [[3siv]] - h-snRNP U4/U6 + NHP2-like protein + RNA<br />

[[3s6n]], [[1vu2]], [[1vu3]], [[4f77]], [[4f7u]] - h-snRNP 8S assembly<br />

[[4m77]], [[4m78]], [[4m7a]], [[4m7d]] - h-snRNP LSM8 assembly<br />

[[2bn5]] - Dm-snRNP U1 70kDa + PSI B box – NMR<br />

===Heterogenous nuclear ribonucleoprotein===

[[3s01]] – m-hnRNP L RRM3 domain – mouse<br />

[[3tyt]] - m-hnRNP L<br />

[[2e5i]] - m-hnRNP L RRM – NMR<br />

[[2db1]] - m-hnRNP F RRM – NMR<br />

[[1ha1]], [[1l3k]], [[1up1]] - h-hnRNP A1 RRM<br />

[[2lyv]] - h-hnRNP A1 RRM 1-2 – NMR<br />

[[2up1]] - h-hnRNP A1 RRM 1-2 + DNA<br />

[[3s7r]] - h-hnRNP A/B<br />

[[1x4b]] - h-hnRNP A2/B1 RRM – NMR<br />

[[1txp]] - h-hnRNP C oligomerization domain – NMR<br />

[[1wf2]] - h-hnRNP C1/C2 RRM – NMR<br />

[[1hd0]], [[1hd1]], [[1iqt]] - h-hnRNP D0 RRM – NMR<br />

[[2hgl]], [[2hgm]], [[2hgn]] - h-hnRNP F QRRM – NMR<br />

[[1wg5]], [[1wez]], [[2lxu]] - h-hnRNP H RRM – NMR<br />

[[2ad9]], [[2adb]], [[2adc]] - h-hnRNP I – NMR<br />

[[1zzk]] - h-hnRNP K KH domain<br />

[[3r27]], [[3t08]] - h-hnRNP L RRM<br />

[[2do0]], [[2dh9]], [[2dgv]] - h-hnRNP M RRM – NMR<br />

[[2dgu]] - h-hnRNP Q RRM – NMR<br />

[[2dk2]] - h-hnRNP R RRM – NMR<br />

''Heterogenous nuclear ribonucleoprotein binary complex''