User:Wayne Decatur/Sequence analysis tools: Difference between revisions
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==Nucleic acid system building== | ==Nucleic acid system building== | ||
* [http://www.nupack.org/ NUPACK] - "NUPACK is a growing software suite for the analysis and design of nucleic acid systems." | * [http://www.nupack.org/ NUPACK] - "NUPACK is a growing software suite for the analysis and design of nucleic acid systems." | ||
Fungal Genome Resources | |||
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http://fungalgenomes.org/ | |||
http://1000.fungalgenomes.org/home/ | |||
http://fungidb.org/fungidb/ (about it --> http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245123/) | |||
http://genome.jgi.doe.gov/programs/fungi/1000fungalgenomes.jsf <--- nice graphic of situation related to 1000 fungal genomes project | |||
http://genome.jgi-psf.org/programs/fungi/index.jsf | |||
http://www.broadinstitute.org/scientific-community/science/projects/fungal-genome-initiative/fungal-genomics | |||
http://fungi.ensembl.org/index.html | |||
http://en.wikipedia.org/wiki/List_of_sequenced_fungi_genomes <-- how current is it??? | |||
For genomic arrangement (synteny) comparisons/Fungal Genomis Resources | |||
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Synteny Viewer listed under every [SGD](http://www.yeastgenome.org/) gene on Sequence tab, near bottom of page | |||
http://www.genomicus.biologie.ens.fr/genomicus-fungi-19.01/cgi-bin/search.pl | |||
[Yeast Gene Order Browser (YGOB)] (http://ygob.ucd.ie/) | |||
