User:Wayne Decatur/Sequence analysis tools: Difference between revisions
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* [http://sing.ei.uvigo.es/ALTER/ ALTER (ALignment Transformation EnviRonment)] - complex interface but offers lots of options for output. I used it as part of my workflow to get closer to special NEXUS format (or intermediate) for performing maximum likelihood phylogenetic analysis of large sets of sequences. | * [http://sing.ei.uvigo.es/ALTER/ ALTER (ALignment Transformation EnviRonment)] - complex interface but offers lots of options for output. I used it as part of my workflow to get closer to special NEXUS format (or intermediate) for performing maximum likelihood phylogenetic analysis of large sets of sequences. | ||
* [http://sequenceconversion.bugaco.com/converter/biology/sequences/clustal_to_fasta.php Sequence conversion Provided by bugaco.com] - a lot of conversion choices with easy interface. When I had interleaved clustal format it converted nicely to a straight fasta listing for the sequence for every organism. | * [http://sequenceconversion.bugaco.com/converter/biology/sequences/clustal_to_fasta.php Sequence conversion Provided by bugaco.com] - a lot of conversion choices with easy interface. When I had interleaved clustal format it converted nicely to a straight fasta listing for the sequence for every organism. | ||
* [http://bioinformatics.org/sms2/three_to_one.html Three to One] converts three letter amino acid sequence translations to single letter translations. | |||
* [http://bioinformatics.org/sms2/one_to_three.html One to Three] converts single letter amino acid sequence translations to three letter translations. | |||
==Random sequence generators== | ==Random sequence generators== | ||
