1rz5: Difference between revisions
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|PDB= 1rz5 |SIZE=350|CAPTION= <scene name='initialview01'>1rz5</scene>, resolution 2.40Å | |PDB= 1rz5 |SIZE=350|CAPTION= <scene name='initialview01'>1rz5</scene>, resolution 2.40Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene> | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene> | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/Cytochrome-c_peroxidase Cytochrome-c peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.5 1.11.1.5] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Cytochrome-c_peroxidase Cytochrome-c peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.5 1.11.1.5] </span> | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY=[[1nml|1NML]], [[1rz6|1RZ6]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rz5 OCA], [http://www.ebi.ac.uk/pdbsum/1rz5 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1rz5 RCSB]</span> | |||
}} | }} | ||
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[[Category: Pereira, A S.]] | [[Category: Pereira, A S.]] | ||
[[Category: Romao, M J.]] | [[Category: Romao, M J.]] | ||
[[Category: | [[Category: electron transport]] | ||
[[Category: | [[Category: haem]] | ||
[[Category: oxidoreductase | [[Category: oxidoreductase]] | ||
[[Category: peroxidase]] | |||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 23:35:07 2008'' | ||
Revision as of 20:35, 30 March 2008
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| 1rz5, resolution 2.40Å | |||||||||||||
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| Ligands: | CA, HEM | ||||||||||||
| Activity: | Cytochrome-c peroxidase, with EC number 1.11.1.5 | ||||||||||||
| Related: | 1NML, 1RZ6
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
Di-haem Cytochrome c Peroxidase, Form OUT
Overview
Cytochrome c peroxidase (CCP) catalyses the reduction of H(2)O(2) to H(2)O, an important step in the cellular detoxification process. The crystal structure of the di-heme CCP from Pseudomonas nautica 617 was obtained in two different conformations in a redox state with the electron transfer heme reduced. Form IN, obtained at pH 4.0, does not contain Ca(2+) and was refined at 2.2 A resolution. This inactive form presents a closed conformation where the peroxidatic heme adopts a six-ligand coordination, hindering the peroxidatic reaction from taking place. Form OUT is Ca(2+) dependent and was crystallized at pH 5.3 and refined at 2.4 A resolution. This active form shows an open conformation, with release of the distal histidine (His71) ligand, providing peroxide access to the active site. This is the first time that the active and inactive states are reported for a di-heme peroxidase.
About this Structure
1RZ5 is a Single protein structure of sequence from Marinobacter hydrocarbonoclasticus. Full crystallographic information is available from OCA.
Reference
Structural basis for the mechanism of Ca(2+) activation of the di-heme cytochrome c peroxidase from Pseudomonas nautica 617., Dias JM, Alves T, Bonifacio C, Pereira AS, Trincao J, Bourgeois D, Moura I, Romao MJ, Structure. 2004 Jun;12(6):961-73. PMID:15274917
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