2by4: Difference between revisions
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|PDB= 2by4 |SIZE=350|CAPTION= <scene name='initialview01'>2by4</scene>, resolution 3.30Å | |PDB= 2by4 |SIZE=350|CAPTION= <scene name='initialview01'>2by4</scene>, resolution 3.30Å | ||
|SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Chain+A'>AC1</scene> | |SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Chain+A'>AC1</scene> | ||
|LIGAND= <scene name='pdbligand= | |LIGAND= <scene name='pdbligand=ACP:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENYLATE+ESTER'>ACP</scene>, <scene name='pdbligand=AD4:(3S,3AR,4S,6S,6AR,7S,8S,9BS)-6-(ACETYLOXY)-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-{[(2Z)-2-METHYLBUT-2-ENOYL]OXY}-7-(OCTANOYLOXY)-2-OXO-2,3,3A,4,5,6,6A,7,8,9B-DECAHYDROAZULENO[4,5-B]FURAN-4-YL+12-[(TERT-BUTOXYCARBONYL)AMINO]DODECANOATE'>AD4</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/Calcium-transporting_ATPase Calcium-transporting ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.8 3.6.3.8] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Calcium-transporting_ATPase Calcium-transporting ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.8 3.6.3.8] </span> | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2by4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2by4 OCA], [http://www.ebi.ac.uk/pdbsum/2by4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2by4 RCSB]</span> | |||
}} | }} | ||
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[[Category: Olsen, C E.]] | [[Category: Olsen, C E.]] | ||
[[Category: Soehoel, H.]] | [[Category: Soehoel, H.]] | ||
[[Category: atp-binding]] | [[Category: atp-binding]] | ||
[[Category: ca2+-atpase]] | [[Category: ca2+-atpase]] | ||
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[[Category: phosphorylation]] | [[Category: phosphorylation]] | ||
[[Category: prostate cancer]] | [[Category: prostate cancer]] | ||
[[Category: sarcoplasmic reticulum]] | [[Category: sarcoplasmic reticulum,transmembrane]] | ||
[[Category: serca]] | [[Category: serca]] | ||
[[Category: thapsigargin]] | [[Category: thapsigargin]] | ||
[[Category: transport]] | [[Category: transport]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 02:13:28 2008'' | ||
Revision as of 23:13, 30 March 2008
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| 2by4, resolution 3.30Å | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sites: | AC1 | ||||||||||||
| Ligands: | ACP, AD4, MG, NA | ||||||||||||
| Activity: | Calcium-transporting ATPase, with EC number 3.6.3.8 | ||||||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
SR CA(2+)-ATPASE IN THE HNE2 STATE COMPLEXED WITH THE THAPSIGARGIN DERIVATIVE BOC-12ADT.
Overview
An analysis of the binding of the 8-O-N-tert-butoxycarbonyl-12-aminododecanoyl derivative of 8-O-debutanoylthapsigargin to the target molecule, the SERCA pump, has revealed the importance of the length and flexibility of the side chain attached to O-8. Based on the analysis a series of analogues to the 2-unsubstituted analogue trilobolide has been constructed and shown to be equipotent with thapsigargin as SERCA inhibitors. Only the 12-Boc-aminododecaonoyl derivative, however, was found to be apoptotic.
About this Structure
2BY4 is a Single protein structure of sequence from Oryctolagus cuniculus. Full crystallographic information is available from OCA.
Reference
Natural products as starting materials for development of second-generation SERCA inhibitors targeted towards prostate cancer cells., Sohoel H, Jensen AM, Moller JV, Nissen P, Denmeade SR, Isaacs JT, Olsen CE, Christensen SB, Bioorg Med Chem. 2006 Apr 15;14(8):2810-5. Epub 2006 Jan 10. PMID:16412648
Page seeded by OCA on Mon Mar 31 02:13:28 2008
Proteopedia Page Contributors and Editors (what is this?)
- Pages with broken file links
- Calcium-transporting ATPase
- Oryctolagus cuniculus
- Single protein
- Christensen, S B.
- Denmeade, S R.
- Isaacs, J T.
- Jensen, A L.
- Moller, J V.
- Nissen, P.
- Olsen, C E.
- Soehoel, H.
- Atp-binding
- Ca2+-atpase
- Calcium
- Calcium transport
- Endoplasmic reticulum
- Hydrolase
- Ion transport
- Magnesium
- Metal-binding
- Multigene family
- Nucleotide-binding
- P-type atpase
- Phosphorylation
- Prostate cancer
- Sarcoplasmic reticulum,transmembrane
- Serca
- Thapsigargin
- Transport
