5cyt: Difference between revisions

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==REFINEMENT OF MYOGLOBIN AND CYTOCHROME C==

== Structural highlights ==

<table><tr><td colspan='2'>[[5cyt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thunnus_alalunga Thunnus alalunga~~]. This structure supersedes the now removed PDB entries and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2cyt 2cyt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CYT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CYT FirstGlance]. <br>

<table><tr><td colspan='2'>[[5cyt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Albacore Albacore]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4cyt 4cyt] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2cyt 2cyt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CYT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CYT FirstGlance]. <br>

</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>

<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cyt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5cyt RCSB], [http://www.ebi.ac.uk/pdbsum/5cyt PDBsum]</span></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cyt OCA], [http://pdbe.org/5cyt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cyt RCSB], [http://www.ebi.ac.uk/pdbsum/5cyt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cyt ProSAT]</span></td></tr>

</table>

== Function ==

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<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=5cyt ConSurf].

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__TOC__

</StructureSection>

[[Category: ~~Thunnus alalunga~~]]

[[Category: Albacore]]

[[Category: Takano, T]]

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 ==REFINEMENT OF MYOGLOBIN AND CYTOCHROME C==
 <StructureSection load='5cyt' size='340' side='right' caption='[[5cyt]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5cyt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thunnus_alalunga Thunnus alalunga]. This structure supersedes the now removed PDB entries  and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2cyt 2cyt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CYT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CYT FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5cyt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Albacore Albacore]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4cyt 4cyt] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2cyt 2cyt]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CYT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CYT FirstGlance]. <br>
 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
 <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cyt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5cyt RCSB], [http://www.ebi.ac.uk/pdbsum/5cyt PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cyt OCA], [http://pdbe.org/5cyt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cyt RCSB], [http://www.ebi.ac.uk/pdbsum/5cyt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cyt ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 17: / Line 18: @@
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=5cyt ConSurf].
 <div style="clear:both"></div>
@@ Line 29: / Line 30: @@
 __TOC__
 </StructureSection>
-[[Category: Thunnus alalunga]]
+[[Category: Albacore]]
 [[Category: Takano, T]]