Tachyplesin

Introduction

spinqualitylabelsall models 1MA2 Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Tachyplesin I (TPI) is an antimicrobial polypeptide originally detected in Japanese Horse Shoe Crab. The antimicrobial activity of peptides is closely related to the composition of the pathogen membrane. Bacteria and fungi have negatively charged membranes, and the interaction of cationic peptides such as tachyplesin I is mediated in large part by electrostatic interactions. It shows high affinity for lipopolysaccharides (LPS) of gram-negative bacteria, thus neutralizing its effects. It has also been reported to inhibit the growth of gram positive bacteria, fungui and viruses. Structural highlights The aminoacid sequence of the TPI is H-Lys-Trp-Cys-Phe-Arg-Val-Cys-Tyr-Arg-Gly-Ile-Cys-Tyr-Arg-Arg-Cys-Arg-NH₂ with disulfide bonds between Cys³ and Cys¹⁶/Cys⁷ and Cys¹². File:Scheme.jpg Besides, there exists H-bond and aromatic ring stacking interactions which helps stabilizing the hairpin loop structure of the peptide. There are three linear derivatives: TPY4, TPF4 and TPA4. Since linear tachyplesin analogues do not show preferential affinity for LPS, the hairpin properties of the peptide seems to be important for recognition of lipopolysaccharides and its biological activities. TPI undergoes confirmation change in presence of LPS . The backbone of the polypeptide becomes more rigid and twisted in presence of LPS, than in the presence of water , making it more stable. Function This is a sample scene created with SAT to color by Group, and another to make a transparent representation of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

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Shulamit Idzikowski, Janak Raj Joshi, Michal Harel, Angel Herraez, Alexander Berchansky, Jaime Prilusky, Joel L. Sussman