Practical Guide to Homology Modeling: Difference between revisions
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[[Image:Seq-algn-lo-complexity.png|center]] | [[Image:Seq-algn-lo-complexity.png|center]] | ||
The 18 residues marked X were not included in the identity calculation. In contrast, when the same sequence search is performed at PDB-Europe, 100% sequence identity is reported. However, other aspects of the report at PDB-Europe are less satisfactory (e.g. the length of the alignment is not stated; the sequences are not numbered) and hence we recommend using pdb.org despite its misleading sequence identity percentages. | The 18 residues marked X were not included in the identity calculation. In contrast, when the same sequence search is performed at [http://www.ebi.ac.uk/pdbe PDB-Europe], 100% sequence identity is reported. However, other aspects of the report at PDB-Europe are less satisfactory (e.g. the length of the alignment is not stated; the sequences are not numbered) and hence we recommend using pdb.org despite its misleading sequence identity percentages. But you may certainly want to run the sequence search at [http://www.ebi.ac.uk/pdbe PDB-Europe] to compare the reported identity percentages. | ||
== References == | == References == | ||
<references/> | <references/> | ||
