Practical Guide to Homology Modeling: Difference between revisions
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At UniProt.Org, find your protein and click on ''Structure''. | At UniProt.Org, find your protein and click on ''Structure''. | ||
Under the subheading ''3D Structure Databases'', click on the linked UniProt ID at ProteinModelPortal. Here you will find graphics showing the coverage | ====Protein Model Portal=== | ||
Under the subheading ''3D Structure Databases'', click on the linked UniProt ID at ProteinModelPortal. Here you will find bar graphics showing the coverage by pre-calculated homology models. Touching the blue bars reports the sequence range for each model. | |||
Below is a table listing sequence ranges and percentages of sequence identity. Clicking on '''<nowiki>[Show]</nowiki>''' give you a report with a link to download the homology model. | Below is a table listing sequence ranges and percentages of sequence identity. Clicking on '''<nowiki>[Show]</nowiki>''' give you a report with a link to download the homology model. | ||
====SMR: Swiss Model Repository==== | |||
This give you similar coverage graphics, but limited to models generated by Swiss Model. Clicking on any one blue graphic bar shows details below, including links to download the model. | |||
====ModBase==== | |||
The initial page does not list all models. Open the pull-down menu ''Select Option'', and pick '''Model Details'''. Now there is a table below with information about each pre-calculated model. | |||
==How To Explore 3D Models== | ==How To Explore 3D Models== | ||
