Tachyplesin

spinqualitylabelsall models 1ma2 Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image   Print3D Introduction Tachyplesin I (TP-I) is an antimicrobial polypeptide originally detected in the leukocytes of Japanese Horse Shoe Crab. It has been reported to inhibit the growth of bacteria, fungui and viruses. The antimicrobial activity of the polypeptide is contributed by electrostatic interaction between the negatively charged membrane of bacteria and fungi to positively charged part of TP-I (see the Hydrophobic and Cationic (+) amino acids). Specifically, TP-I shows high affinity for negatively charged lipopolysaccharides (LPS) of gram-negative bacteria, thus neutralizing its effects. Structural highlights Tachyplesin I is a 17-residue peptide containing six cationic residues with molecular weight 2,269 and isoelectric point (pI) of 9.93. The amino acid sequence of the TP-I is NH₂-Lys-Trp-Cys-Phe-Arg-Val-Cys-Tyr-Arg-Gly-Ile-Cys-Tyr-Arg-Arg-Cys-Arg-CONH₂. Figure 1: Simplified model of Tachyplesin I. The sequence adapts an antiparallel β-sheet (hairpin) conformation in solution, with a β-turn for the centrally located residues Tyr-Arg-Gly-Ile, stabilized by two cross-strand disulfide bonds between Cys³-Cys¹⁶ and Cys⁷-Cys¹², and C-terminus amidation. In addition there are H-bonds and aromatic rings stacking interactions which helps stabilize the hairpin loop structure of the peptide. TP-I undergoes a conformational change in the presence of LPS . The backbone of the polypeptide becomes more rigid and twisted in the presence of LPS, than in the presence of water, making it more stable. The two β-strands slightly extends when TP-I binds to LPS and stabilize the whole structure of TP-I as a result. Fluorescence studies indicate that the Trp residue incorporated into the hydrophobic environment of LPS. NMR studies suggest that residues located in the N and C termini of TP-I are involved in the binding to LPS and that phosphate groups of LPS are in close proximity to TP-I. Along with the requirement for β-hairpin conformation, there is a second requirement for activity and it is the ability to rearrange to a more amphiphilic conformation upon membrane association. In the wild type TP-I, Arg 5 and Arg 14, provides this by acting as hinges. Derivatives or Analogue Among all the existing interactions, cysteine bridge being considered as the principal contributor of the structure, three linear derivatives of TP-I (TPY4, TPF4 and TPA4) were created, in which the bridging cysteine residues are uniformly replaced with tyrosine, phenylalanine, and alanine, respectively. The linear derivatives of TP-I are mentioned below: Of those 3 linear derivatives of TP-I, NMR structural investigation had shown TPA4 to be unstructured in solution. Also, TPA4 was inactive in terms of antimicrobial activity. In contrast, TPY4 and TPF4 adapts hairpin loop and also had antimicrobial properties, typical to TP-I. Therefore, the hairpin properties of the peptide seems to be important for recognition of lipopolysaccharides and its biological activities. Besides replacement of cysteines, deletions was performed in TP-I which yielded Cysteine Deleted Tachyplesin (CDT). CTD is a linear mutant lacking the cysteines and therefore lacking the disulfide bonds (NH₂-Lys-Trp-Phe-Arg-Val-Tyr-Arg-Gly-Ile-Tyr-Arg-Arg-Arg-CONH₂). It contains a broad spectrum of bactericidal activity with a reduced hemolytic property that stems from selective interactions with the negatively charged lipids including LPS. CDT has been demonstrated to markedly inhibit the growth of Gram negative and Gram positive bacterial strains akin to TP-I. But, minimum inhibitory concentration (MIC) values for CDT were found to be lower against Escherichia coli and Listeria monocytogenes in comparison to the wild type TP-I peptide. CDT Structure CDT, like TP-I, has a β-turn in the same preserved residues in its LPS-bound structure. The β-hairpin topology of CDT is sustained by the unique packing interactions between the aromatic ring of Trp2 and the side-chain of nonpolar amino acid of Val5 and the cationic side-chain of residue Arg11. There is a close proximity between residues Trp2 and Ile9, supported by the nuclear overhauser effects (NOEs) involving indole ring protons of Trp2 with side-chain proton of Ile9. These packing interactions have rendered an approximate anti-parallel orientation of the hairpin structure of CDT in presence of LPS. The β-hairpin like structure of CDT displays an extended positively charged surface patch of residues Arg 4, 7, 12 and 13. These positively charged basic residues interacts with the anionic phosphate groups of LPS with the help of salt bridges and/or hydrogen bonds. The interactions between CDT and LPS may lead to a plausible disruption or fluidization of LPS structures facilitating traversal of the peptide through the LPS-outer membrane. Mode of action TP-I has affinity to LPS and also has ability to permeabilize the cell membrane of pathogens. TP-I primary and critical target is the cell membrane.Docking model suggests strong affinity between TP-I and LPS; gained by interaction between cationic residues of TP-I with phosphate group and saccharides of LPS. Furthermore, interaction between hydrophobic residues of TP-I with acyl chains of LPS strengthens the TP-I/LPS interaction. The binding of TP-I/LPS neutralizes LPS, which is widely considered as endotoxin, and disrupts membrane function. In addition to LPS binding, footpriting analysis has revealed the binding of TP-I to DNA by interacting specifically in minor groove of DNA duplex. The interaction between TP-I and DNA is contributed by secondary structure of the peptide which contains an antiparallel beta-sheet constrained by two disulfide bridges and connected by β-turn . By binding to DNA and RNA TP-I inhibits the synthesis of macromolecules. In summary, three processes might happen upon TP-I exposure: (1) Bacterial cell membranes are penetrated without disruption of the membrane and the peptide reaches the inner structures of the cell, damaging critical intracellular targets and interfering with intracellular functions and normal metabolism. (2) Pores are formed in the cell wall, causing leakage of intracellular content, leading to cell death. (3) DNA, RNA or protein synthesis are inhibited, killing the bacteria. Importance and relevance Evidences suggest that TP-I has ability to permeabilize the cell membranes of pathogens.. Also, LPS and DNA being the potential biological targets of the peptide, its antimicrobial activity might be exploited. Eyeing the potential of TP-I, it has been insetred successfully in genome of Ornithogalum dubium and Ornithogalum thyrsoides. These ornamentals plants were originally sensitive to soft rot erwinias (SREs) and insertion of TP-I in the plants has successfully protected them without affecting their normal physiology . Escherichia coli and Listeria monocytogenes are Gram-negative and Gram-positive bacteria, respectively. They are the most common intestinal tract pathogenic bacteria in animals and humans. Studying the effect of TP-I on E. coli and S. aureus will be valuable in guiding clinical practice. The potential mechanism of E. coli membrane disruption by TP-I is the induction of macromolecule leakage into the cytoplasm and the release of potassium ions, leading to an increase in inner permeability, the formation of a toroidal pore, the neutralization of LPS, and the disruption of the permeability barrier of the outer membrane. TP-I killed E. coli mainly through cell membrane damage and intracellular esterase inactivation dependent on concentration. In food production, requirements must be met for producing high quality food with minimal microbial contamination, and the determination of microbial viability based on different physiological and metabolic parameters is critical for acceptable sterilization. Therefore, the presence of injured, metabolically active bacteria is a very important aspect to consider in food production and for clinical applications. Sub lethally injured cells might be repaired under suitable conditions. If TP-I is applied as a clinical treatment at a lower concentration than the MIC over a long period of time, drug resistance could develop. Possible Function as anti-tumor peptide The cationic nature of Tachyplesin allows it to interact with anionic phospholipids present in the bacterial membrane and thereby disrupting membrane function. Besides this, the structural nature of Tachyplesin also highlights its antitumor properties. Since it can interact with the membrance of prokaryotic cell, it is likely that TP-I can also interact with the mitochondrial membrane of eukaryotic cells. Mitochondria are widely believed to have evolved from prokaryotic cells, that have established a symbiotic relationship with the primitive eukaryotic cell which signifies the structural similarity of mitochondrial and prokaryotic membranes. It was found that the synthetic Tachyplesin conjugated to the integrin homing domain (RGD-Tachyplesin) can inhibit the proliferation of TSU tumor cells prostate cancer and B16 melanoma cells as well as endothelial cells in a dose-dependent manner in vitro and reduce tumor growth in vivo by inducing apoptosis.. Besides this RGD-Tachyplesin can activate caspases and induce Fas ligand, which are the markers for programmed cell death (PCD). Collectively, suppression of tumor associated cell and induction of programmed cell death will eventually act as therapy for cancer and tumor cells. See Also Tachyplesin I 3D structures Quiz 1 TP-I is.. A Gram-negative bacteria A Gram-positive bacteria leukocytes of Japanese An antimicrobial peptide 2 How many residues TP-I has? 16 14 17 15 3 What is the secondery structure of TP-I? Two antiparallel β-sheet Two antiparallel α-Helixes Two parallel β-sheet Two parallel α-Helixes 4 Which of the following derivatives is inactive? TPF4 TPY4 TPA4 CDT 5 How many cationic residues TP-I has? 7 6 16 14 6 How many negative amino acids TP-I has? One Non Two Six

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