2pc5: Difference between revisions
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|PDB= 2pc5 |SIZE=350|CAPTION= <scene name='initialview01'>2pc5</scene>, resolution 2.20Å | |PDB= 2pc5 |SIZE=350|CAPTION= <scene name='initialview01'>2pc5</scene>, resolution 2.20Å | ||
|SITE= <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+167'>AC1</scene> | |SITE= <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+167'>AC1</scene> | ||
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene> | |LIGAND= <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene> | ||
|ACTIVITY= [http://en.wikipedia.org/wiki/dUTP_diphosphatase dUTP diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.23 3.6.1.23] | |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/dUTP_diphosphatase dUTP diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.23 3.6.1.23] </span> | ||
|GENE= T6H20.30 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana]) | |GENE= T6H20.30 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana]) | ||
|DOMAIN= | |||
|RELATEDENTRY=[[2p9o|2P9O]] | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pc5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pc5 OCA], [http://www.ebi.ac.uk/pdbsum/2pc5 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2pc5 RCSB]</span> | |||
}} | }} | ||
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[[Category: Bajaj, M.]] | [[Category: Bajaj, M.]] | ||
[[Category: Moriyama, H.]] | [[Category: Moriyama, H.]] | ||
[[Category: arabidopsis]] | [[Category: arabidopsis]] | ||
[[Category: dutpase]] | [[Category: dutpase]] | ||
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[[Category: magnesium]] | [[Category: magnesium]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:34:08 2008'' | ||
Revision as of 01:34, 31 March 2008
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| 2pc5, resolution 2.20Å | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sites: | AC1 | ||||||||||||
| Ligands: | MG | ||||||||||||
| Gene: | T6H20.30 (Arabidopsis thaliana) | ||||||||||||
| Activity: | dUTP diphosphatase, with EC number 3.6.1.23 | ||||||||||||
| Related: | 2P9O
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
Native crystal structure analysis on Arabidopsis dUTPase
Overview
The deoxyuridine triphosphate nucleotidohydrolase gene from Arabidopsis thaliana was expressed and the gene product was purified. Crystallization was performed by the hanging-drop vapour-diffusion method at 298 K using 2 M ammonium sulfate as the precipitant. X-ray diffraction data were collected to 2.2 A resolution using Cu K alpha radiation. The crystal belongs to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 69.90, b = 70.86 A, c = 75.55 A. Assuming the presence of a trimer in the asymmetric unit, the solvent content was 30%, with a V(M) of 1.8 A3 Da(-1).
About this Structure
2PC5 is a Single protein structure of sequence from Arabidopsis thaliana. Full crystallographic information is available from OCA.
Reference
Purification, crystallization and preliminary crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Arabidopsis thaliana., Bajaj M, Moriyama H, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 May 1;63(Pt, 5):409-11. Epub 2007 Apr 14. PMID:17565183
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