2ret: Difference between revisions
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|PDB= 2ret |SIZE=350|CAPTION= <scene name='initialview01'>2ret</scene>, resolution 2.210Å | |PDB= 2ret |SIZE=350|CAPTION= <scene name='initialview01'>2ret</scene>, resolution 2.210Å | ||
|SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+B+1'>AC1</scene>, <scene name='pdbsite=AC2:Cl+Binding+Site+For+Residue+F+2'>AC2</scene>, <scene name='pdbsite=AC3:Na+Binding+Site+For+Residue+H+3'>AC3</scene> and <scene name='pdbsite=AC4:Na+Binding+Site+For+Residue+F+4'>AC4</scene> | |SITE= <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+B+1'>AC1</scene>, <scene name='pdbsite=AC2:Cl+Binding+Site+For+Residue+F+2'>AC2</scene>, <scene name='pdbsite=AC3:Na+Binding+Site+For+Residue+H+3'>AC3</scene> and <scene name='pdbsite=AC4:Na+Binding+Site+For+Residue+F+4'>AC4</scene> | ||
|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene> | |LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= epsi ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=672 Vibrio vulnificus]), epsj ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=672 Vibrio vulnificus]) | |GENE= epsi ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=672 Vibrio vulnificus]), epsj ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=672 Vibrio vulnificus]) | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ret FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ret OCA], [http://www.ebi.ac.uk/pdbsum/2ret PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ret RCSB]</span> | |||
}} | }} | ||
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[[Category: Korotkov, K V.]] | [[Category: Korotkov, K V.]] | ||
[[Category: Yanez, M E.]] | [[Category: Yanez, M E.]] | ||
[[Category: cholera]] | [[Category: cholera]] | ||
[[Category: general secretion pathway]] | [[Category: general secretion pathway]] | ||
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[[Category: type 4 pilin biogenesis]] | [[Category: type 4 pilin biogenesis]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:59:35 2008'' | ||
Revision as of 01:59, 31 March 2008
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| 2ret, resolution 2.210Å | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sites: | AC1, AC2, AC3 and AC4 | ||||||||||||
| Ligands: | CL, MSE, NA | ||||||||||||
| Gene: | epsi (Vibrio vulnificus), epsj (Vibrio vulnificus) | ||||||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
The crystal structure of a binary complex of two pseudopilins: EpsI and EpsJ from the Type 2 Secretion System of Vibrio vulnificus
Overview
Type II secretion systems (T2SS) translocate virulence factors from the periplasmic space of many pathogenic bacteria into the extracellular environment. The T2SS of Vibrio cholerae and related species is called the extracellular protein secretion (Eps) system that consists of a core of multiple copies of 11 different proteins. The pseudopilins, EpsG, EpsH, EpsI, EpsJ and EpsK, are five T2SS proteins that are thought to assemble into a pseudopilus, which is assumed to interact with the outer membrane pore, and may actively participate in the export of proteins. We report here biochemical evidence that the minor pseudopilins EpsI and EpsJ from Vibrio species interact directly with one another. Moreover, the 2.3 A resolution crystal structure of a complex of EspI and EpsJ from Vibrio vulnificus represents the first atomic resolution structure of a complex of two different pseudopilin components from the T2SS. Both EpsI and EpsJ appear to be structural extremes within the family of type 4a pilin structures solved to date, with EpsI having the smallest, and EpsJ the largest, "variable pilin segment" seen thus far. A high degree of sequence conservation in the EpsI:EpsJ interface indicates that this heterodimer occurs in the T2SS of a large number of bacteria. The arrangement of EpsI and EpsJ in the heterodimer would correspond to a right-handed helical character of proteins assembled into a pseudopilus.
About this Structure
2RET is a Protein complex structure of sequences from Vibrio vulnificus. Full crystallographic information is available from OCA.
Reference
The crystal structure of a binary complex of two pseudopilins: EpsI and EpsJ from the type 2 secretion system of Vibrio vulnificus., Yanez ME, Korotkov KV, Abendroth J, Hol WG, J Mol Biol. 2008 Jan 11;375(2):471-86. Epub 2007 Oct 22. PMID:18022192
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