1pa4: Difference between revisions
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|GENE= MPN156 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2104 Mycoplasma pneumoniae]) | |GENE= MPN156 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2104 Mycoplasma pneumoniae]) | ||
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0858 RbfA]</span> | |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0858 RbfA]</span> | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pa4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pa4 OCA], [http://www.ebi.ac.uk/pdbsum/1pa4 PDBsum | |RELATEDENTRY=[[1kkg|1KKG]] | ||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1pa4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1pa4 OCA], [http://www.ebi.ac.uk/pdbsum/1pa4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1pa4 RCSB]</span> | |||
}} | }} | ||
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[[Category: structural genomic]] | [[Category: structural genomic]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:57:01 2008'' | ||
Revision as of 19:57, 30 March 2008
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| 1pa4 | |||||||||||||
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| Gene: | MPN156 (Mycoplasma pneumoniae) | ||||||||||||
| Domains: | RbfA | ||||||||||||
| Related: | 1KKG
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| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
Solution structure of a putative ribosome-binding factor from Mycoplasma pneumoniae (MPN156)
Overview
The solution structure of MPN156, a ribosome-binding factor A (RBFA) protein family member from Mycoplasma pneumoniae, is presented. The structure, solved by nuclear magnetic resonance, has a type II KH fold typical of RNA binding proteins. Despite only approximately 20% sequence identity between MPN156 and another family member from Escherichia coli, the two proteins have high structural similarity. The comparison demonstrates that many of the conserved residues correspond to conserved elements in the structures. Compared to a structure based alignment, standard alignment methods based on sequence alone mispair a majority of amino acids in the two proteins. Implications of these discrepancies for sequence based structural modeling are discussed.
About this Structure
1PA4 is a Single protein structure of sequence from Mycoplasma pneumoniae. Full crystallographic information is available from OCA.
Reference
Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog., Rubin SM, Pelton JG, Yokota H, Kim R, Wemmer DE, J Struct Funct Genomics. 2003;4(4):235-43. PMID:15185964
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Proteopedia Page Contributors and Editors (what is this?)
- Pages with broken file links
- Mycoplasma pneumoniae
- Single protein
- BSGC, Berkeley Structural Genomics Center.
- Kim, R.
- Pelton, J G.
- Rubin, S M.
- Wemmer, D E.
- Yokota, H.
- Berkeley structural genomics center
- Bsgc structure funded by nih
- Distant homology
- Protein structure initiative
- Psi
- Ribosome-binding factor
- Structural genomic
