NADP-dependent malic enzyme: Difference between revisions
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== | xml format | ||
<StructureSection load=' | Viruses | ||
Best example is | Eukaryota | ||
Molecule | Bacteria | ||
== Lysozyme == | |||
<StructureSection load='1swy' size='340' side='right' caption='The best structure for Lysozyme shown: 1swy' scene=''> | |||
Best example is 1swy and is shown in the viewer.<br> | |||
Molecule Lysozyme, also known as Lysozyme, CP-7 lysin, Muramidase, Endolysin, 1,4-beta-N-acetylmuramidase, Lysis protein, CP-1 lysin, Lysozyme murein hydrolase, Protein gp17, Transglycosylase, Hevamine-A, Chitinase and L-alanyl-D-glutamate peptidase. | |||
== Function == | |||
==Catalytic Activity == | ==Catalytic Activity == | ||
| Line 12: | Line 17: | ||
== Biological process == | == Biological process == | ||
Is involved in the following biological processes:<br> | Is involved in the following biological processes:<br> | ||
cell wall macromolecule catabolic process<br> | |||
peptidoglycan catabolic process<br> | |||
response to | metabolic process<br> | ||
defense response to bacterium<br> | |||
cytolysis<br> | |||
viral release from host cell<br> | |||
carbohydrate metabolic process<br> | carbohydrate metabolic process<br> | ||
chitin catabolic process<br> | |||
polysaccharide catabolic process<br> | |||
cytolysis by virus of host cell<br> | |||
cell wall organization<br> | |||
== In structures == | == In structures == | ||
Lysozyme is found in 595 PDB entries<br> | |||
*<b> | *<b>Viruses</b> (578 PDB entries): <br> | ||
**<b> | **<b>Enterobacteria phage T4</b> (561 PDB entries): <br> | ||
***[[ | ***[[1swy]] <div class="pdb-prints 1swy"></div> | ||
***Title: | ***Title: Use of a Halide Binding Site to Bypass the 1000-atom Limit to Ab initio Structure Determination | ||
*** | ***1.06 A resolution | ||
***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:% | ***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Enterobacteria%20phage%20T4%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries] | ||
**<b> | **<b>Streptococcus phage Cp-1</b> (6 PDB entries): <br> | ||
***[[ | ***[[2j8g]] <div class="pdb-prints 2j8g"></div> | ||
***Title: | ***Title: Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide) | ||
***1.69 A resolution | |||
***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Streptococcus%20phage%20Cp-1%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries] | |||
**<b>Enterobacteria phage lambda</b> (3 PDB entries): <br> | |||
***[[1am7]] <div class="pdb-prints 1am7"></div> | |||
***Title: Lysozyme from bacteriophage lambda | |||
***2.3 A resolution | |||
***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Enterobacteria%20phage%20lambda%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries] | |||
**<b>Enterobacteria phage P1</b> (2 PDB entries): <br> | |||
***[[1xju]] <div class="pdb-prints 1xju"></div> | |||
***Title: Crystal structure of secreted inactive form of P1 phage endolysin Lyz | |||
***1.07 A resolution | |||
***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Enterobacteria%20phage%20P1%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries] | |||
**<b>Streptococcus phage CP-7</b> (1 PDB entries): <br> | |||
***[[4cvd]] <div class="pdb-prints 4cvd"></div> | |||
***Title: Crystal structure of the central repeat of cell wall binding module of Cpl7 | |||
***1.666 A resolution | |||
*<b>Eukaryota</b> (16 PDB entries): <br> | |||
**<b>Hevea brasiliensis</b> (7 PDB entries): <br> | |||
***[[1kqy]] <div class="pdb-prints 1kqy"></div> | |||
***Title: Hevamine Mutant D125A/E127A/Y183F in Complex with Penta-NAG | |||
***1.92 A resolution | |||
***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Hevea%20brasiliensis%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries] | |||
**<b>Meretrix lusoria</b> (3 PDB entries): <br> | |||
***[[4pj2]] <div class="pdb-prints 4pj2"></div> | |||
***Title: Crystal structure of Aeromonas hydrophila PliI in complex with Meretrix lusoria lysozyme | |||
***1.24 A resolution | |||
***Other macromolecules also in this entry: Putative exported protein, . | |||
***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Meretrix%20lusoria%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries] | |||
**<b>Bombyx mori</b> (2 PDB entries): <br> | |||
***[[1gd6]] <div class="pdb-prints 1gd6"></div> | |||
***Title: STRUCTURE OF THE BOMBYX MORI LYSOZYME | |||
***2.5 A resolution | ***2.5 A resolution | ||
***[http://www.ebi.ac.uk/pdbe/entry/search/index?organism_scientific_name:%22Bombyx%20mori%22&all_molecule_names:%22Lysozyme%22&!chimera:y Search for other PDB entries] | |||
**<b>Mus musculus</b> (1 PDB entries): <br> | |||
***[[1iak]] <div class="pdb-prints 1iak"></div> | |||
***Title: HISTOCOMPATIBILITY ANTIGEN I-AK | |||
***1.9 A resolution | |||
***Other macromolecules also in this entry: H-2 class II histocompatibility antigen, A-K beta chain, H-2 class II histocompatibility antigen, A-K alpha chain. | |||
*<b>Bacteria</b> (1 PDB entries): <br> | |||
**<b>Escherichia coli</b> (1 PDB entries): <br> | |||
***[[2qb0]] <div class="pdb-prints 2qb0"></div> | |||
***Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker. | |||
***2.56 A resolution | |||
***Other macromolecules also in this entry: Transcription factor ETV6, . | |||
[[Category:Topic Page]][[Category:PDBe]] | |||
Revision as of 20:33, 12 September 2015
xml format Viruses Eukaryota Bacteria
Lysozyme
<StructureSection load='1swy' size='340' side='right' caption='The best structure for Lysozyme shown: 1swy' scene=>
Best example is 1swy and is shown in the viewer.
Molecule Lysozyme, also known as Lysozyme, CP-7 lysin, Muramidase, Endolysin, 1,4-beta-N-acetylmuramidase, Lysis protein, CP-1 lysin, Lysozyme murein hydrolase, Protein gp17, Transglycosylase, Hevamine-A, Chitinase and L-alanyl-D-glutamate peptidase.
Function
Catalytic Activity
Disease
Relevance
Structural highlights
Biological process
Is involved in the following biological processes:
cell wall macromolecule catabolic process
peptidoglycan catabolic process
metabolic process
defense response to bacterium
cytolysis
viral release from host cell
carbohydrate metabolic process
chitin catabolic process
polysaccharide catabolic process
cytolysis by virus of host cell
cell wall organization
In structures
Lysozyme is found in 595 PDB entries
- Viruses (578 PDB entries):
- Enterobacteria phage T4 (561 PDB entries):
- 1swy
- Title: Use of a Halide Binding Site to Bypass the 1000-atom Limit to Ab initio Structure Determination
- 1.06 A resolution
- Search for other PDB entries
- Streptococcus phage Cp-1 (6 PDB entries):
- 2j8g
- Title: Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide)
- 1.69 A resolution
- Search for other PDB entries
- Enterobacteria phage lambda (3 PDB entries):
- 1am7
- Title: Lysozyme from bacteriophage lambda
- 2.3 A resolution
- Search for other PDB entries
- Enterobacteria phage P1 (2 PDB entries):
- 1xju
- Title: Crystal structure of secreted inactive form of P1 phage endolysin Lyz
- 1.07 A resolution
- Search for other PDB entries
- Streptococcus phage CP-7 (1 PDB entries):
- 4cvd
- Title: Crystal structure of the central repeat of cell wall binding module of Cpl7
- 1.666 A resolution
- Enterobacteria phage T4 (561 PDB entries):
- Eukaryota (16 PDB entries):
- Hevea brasiliensis (7 PDB entries):
- 1kqy
- Title: Hevamine Mutant D125A/E127A/Y183F in Complex with Penta-NAG
- 1.92 A resolution
- Search for other PDB entries
- Meretrix lusoria (3 PDB entries):
- 4pj2
- Title: Crystal structure of Aeromonas hydrophila PliI in complex with Meretrix lusoria lysozyme
- 1.24 A resolution
- Other macromolecules also in this entry: Putative exported protein, .
- Search for other PDB entries
- Bombyx mori (2 PDB entries):
- 1gd6
- Title: STRUCTURE OF THE BOMBYX MORI LYSOZYME
- 2.5 A resolution
- Search for other PDB entries
- Mus musculus (1 PDB entries):
- 1iak
- Title: HISTOCOMPATIBILITY ANTIGEN I-AK
- 1.9 A resolution
- Other macromolecules also in this entry: H-2 class II histocompatibility antigen, A-K beta chain, H-2 class II histocompatibility antigen, A-K alpha chain.
- Hevea brasiliensis (7 PDB entries):
- Bacteria (1 PDB entries):
- Escherichia coli (1 PDB entries):
- 2qb0
- Title: Structure of the 2TEL crystallization module fused to T4 lysozyme with an Ala-Gly-Pro linker.
- 2.56 A resolution
- Other macromolecules also in this entry: Transcription factor ETV6, .
- Escherichia coli (1 PDB entries):