1vyr: Difference between revisions

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==Structure of pentaerythritol tetranitrate reductase complexed with picric acid==

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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=TNF:PICRIC+ACID'>TNF</scene></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vyr OCA], [http://pdbe.org/1vyr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vyr RCSB], [http://www.ebi.ac.uk/pdbsum/1vyr PDBsum]</span></td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vyr OCA], [http://pdbe.org/1vyr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vyr RCSB], [http://www.ebi.ac.uk/pdbsum/1vyr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vyr ProSAT]</span></td></tr>

</table>

== Evolutionary Conservation ==

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Check<jmol>

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/1vyr_consurf.spt"</scriptWhenChecked>

<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/1vyr_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vyr ConSurf].

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 ==Structure of pentaerythritol tetranitrate reductase complexed with picric acid==
 <StructureSection load='1vyr' size='340' side='right' caption='[[1vyr]], [[Resolution|resolution]] 0.90&Aring;' scene=''>
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 </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=TNF:PICRIC+ACID'>TNF</scene></td></tr>
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1gvo|1gvo]], [[1gvq|1gvq]], [[1gvr|1gvr]], [[1gvs|1gvs]], [[1h50|1h50]], [[1h51|1h51]], [[1h60|1h60]], [[1h61|1h61]], [[1h62|1h62]], [[1h63|1h63]], [[1vyp|1vyp]], [[1vys|1vys]]</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vyr OCA], [http://pdbe.org/1vyr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vyr RCSB], [http://www.ebi.ac.uk/pdbsum/1vyr PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vyr OCA], [http://pdbe.org/1vyr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vyr RCSB], [http://www.ebi.ac.uk/pdbsum/1vyr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vyr ProSAT]</span></td></tr>
 </table>
 == Evolutionary Conservation ==
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 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/1vyr_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vy/1vyr_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
    </jmolCheckbox>
-</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vyr ConSurf].
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