5i2b: Difference between revisions
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==Crystal structure of a peptide deformylase from Burkholderia ambifaria with actinonin== | |||
<StructureSection load='5i2b' size='340' side='right' caption='[[5i2b]], [[Resolution|resolution]] 1.70Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[5i2b]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I2B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I2B FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |||
[[Category: | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5hgw|5hgw]]</td></tr> | ||
[[Category: | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i2b OCA], [http://pdbe.org/5i2b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i2b RCSB], [http://www.ebi.ac.uk/pdbsum/5i2b PDBsum]</span></td></tr> | |||
</table> | |||
== Function == | |||
[[http://www.uniprot.org/uniprot/B1FPK4_9BURK B1FPK4_9BURK]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.[HAMAP-Rule:MF_00163] | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Peptide deformylase]] | |||
[[Category: Structural genomic]] | |||
[[Category: Burkholderia ambifaria]] | |||
[[Category: Hydrolase]] | |||
[[Category: Ssgcid]] | |||
Revision as of 04:00, 10 March 2016
Crystal structure of a peptide deformylase from Burkholderia ambifaria with actinonin
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