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=== Binding Sites ===
=== Binding Sites ===
<scene name='72/721542/Tak_binding_site/3'>Tak-875 Binding Site</scene>
<scene name='72/721542/Tak_binding_site/3'>Tak-875 Binding Site</scene>
[[Image:4phuBind2.png|200 px|right|thumb|Figure 2. Second proposed binding site of GPR40. By visual inspection, a second possible binding site was proposed between transmembrane helices 3, 4, and 5 on the intracellular side.]]
[[Image:4phuBind2.png|200 px|right|thumb|Figure 1. Second proposed binding site of GPR40. By visual inspection, a second possible binding site was proposed between transmembrane helices 3, 4, and 5 on the intracellular side.]]
[[Image:4phubind3.png|200 px|right|thumb|Figure 3. Third proposed binding site of GPR40. By visual inspection, a third possible binding site was proposed between transmembrane helices 1, 2, and 7 on the extracellular side.]]
[[Image:4phubind3.png|200 px|right|thumb|Figure 2. Third proposed binding site of GPR40. By visual inspection, a third possible binding site was proposed between transmembrane helices 1, 2, and 7 on the extracellular side.]]


=== Charge Network ===
=== Charge Network ===
hGPR40 has a distinct binding pocket that is established by seven key residues.[[Image:charge network residues.png|300 px|right|thumb|TAK-875 binding residues]]
hGPR40 has a distinct binding pocket that is established by seven key residues.[[Image:charge network residues.png|300 px|right|thumb|Figure 3. TAK-875 binding residues]]
The importance of these residues for [https://en.wikipedia.org/wiki/Agonist agonist] binding was determined by [https://www.neb.com/applications/cloning-and-synthetic-biology/site-directed-mutagenesis mutagenesis] studies. Each of these residues have either a charged or polar R-group that allows them to develop a charge network. This network keeps the residues in a stable, unbound state until exposed to a substrate. When the substrate (an agonist) enters the binding pocket, four of the seven <scene name='72/721541/Hydrogen_binding_1/3'>Key Binding Residues</scene> interact directly with the carboxylate moiety of the agonist. In 2007 and 2009 researchers showed the presence of Arg 183 and Arg 258 in the binding pocket <ref name="Sum">PMID: 17699519</ref><ref name="Sum, C.">PMID:19068482</ref> Along with the two Arginine residues, the charge network incorporates two Tyrosine residues.These residues (Tyr 91 and Tyr 240) also stabilize the carboxylate of the agonists. It was further determined that Tyr 240 is epecially important for binding. Mutation of Tyr 240 caused a reduction in the binding affinity of TAK-875 by eight fold and had a significant effect on the Kd of the protein.<ref name="Srivastava"/>  
The importance of these residues for [https://en.wikipedia.org/wiki/Agonist agonist] binding was determined by [https://www.neb.com/applications/cloning-and-synthetic-biology/site-directed-mutagenesis mutagenesis] studies. Each of these residues have either a charged or polar R-group that allows them to develop a charge network. This network keeps the residues in a stable, unbound state until exposed to a substrate. When the substrate (an agonist) enters the binding pocket, four of the seven <scene name='72/721541/Hydrogen_binding_1/3'>Key Binding Residues</scene> interact directly with the carboxylate moiety of the agonist. In 2007 and 2009 researchers showed the presence of Arg 183 and Arg 258 in the binding pocket <ref name="Sum">PMID: 17699519</ref><ref name="Sum, C.">PMID:19068482</ref> Along with the two Arginine residues, the charge network incorporates two Tyrosine residues.These residues (Tyr 91 and Tyr 240) also stabilize the carboxylate of the agonists. It was further determined that Tyr 240 is epecially important for binding. Mutation of Tyr 240 caused a reduction in the binding affinity of TAK-875 by eight fold and had a significant effect on the Kd of the protein.<ref name="Srivastava"/>  


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=== TAK-875 ===
=== TAK-875 ===
One example of an hGPR40 agonist is TAK-875. TAK-875 has shown efficacy in increasing insulin secretion and lowering blood glucose in rodent models of type 2 diabetes.<ref name="Burant"/> This drug was studied in stage III clinical trials and was able to significantly reduce [[HbA1c]] and fasting plasma glucose levels in Japanese patients with type 2 diabetes that was not controlled by diet and exercise. However, clinical trials were stopped shortly after this study because TAK-875 was suspected of causing liver damage.<ref name="Kaku">PMID:25787200</ref>   
[[Image:Tak-875.png |300 px|right|Figure 4. Structure of TAK-875]] One example of an hGPR40 agonist is <scene name='72/721542/Tak875/2'>Tak-875</scene>. TAK-875 has shown efficacy in increasing insulin secretion and lowering blood glucose in rodent models of type 2 diabetes.<ref name="Burant"/> This drug was studied in stage III clinical trials and was able to significantly reduce [[HbA1c]] and fasting plasma glucose levels in Japanese patients with type 2 diabetes that was not controlled by diet and exercise. However, clinical trials were stopped shortly after this study because TAK-875 was suspected of causing liver damage.<ref name="Kaku">PMID:25787200</ref>   


[[Image:Tak-875.png |300 px|right|Figure Legend]]
<scene name='72/721542/Tak875/2'>Tak-875</scene>


</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>

Revision as of 12:57, 29 March 2016

Human GPR40, also known as Free Fatty Acid Receptor 1 (FFAR1)

hGPR40

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References