Sandbox Reserved 1176: Difference between revisions

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===Na<sup>+</sup> Binding Pocket===
===Na<sup>+</sup> Binding Pocket===
[[Image:Na+ Proteopedia Picture.png |300 px|left|thumb|Figure 2. Residues of the collapsed sodium binding pocket. Trp321 (blue) sets the top of the pocket, where Ser362, Asp113, Thr156 and Asn365 (gray) are involved in hydrogen bonding interactions preventing the coordination of a Na<sup>+</sup> ion.]]  
[[Image:Na+ Proteopedia Picture.png |300 px|left|thumb|Figure 2. Residues of the collapsed sodium binding pocket. Trp321 (blue) sets the top of the pocket, where Ser362, Asp113, Thr156 and Asn365 (gray) are involved in hydrogen bonding interactions preventing the coordination of a Na<sup>+</sup> ion.]]  
<scene name='72/721548/Trp321/1'>Trp321</scene>, which is positioned at the bottom of the <scene name='72/721547/Hydrophobic_binding_pocket/5'>hydrophobic binding pocket</scene>, sets the top of the <scene name='72/721548/Na_bind_pocket/12'> Na<sup>+</sup> binding pocket</scene>. The Na<sup>+</sup> ion binding pocket acts as a negative allosteric site for G protein activity <ref name="SPGP"/>. When Na<sup>+</sup> enters the Na<sup>+</sup> ion binding pocket, it coordinates with Asp95, Gln131, Ser135, and Asp113, decreasing the signaling activity of NTSR1 <ref name="SPGP"/>. When NTSR1 is in its active state, the Na<sup>+</sup> ion binding pocket is collapsed. This prevents the regulation of protein activity through a Na<sup>+</sup> ion, as the Na<sup>+</sup> ion is unable to coordinate via a salt bridge to Asp113 (Figure 2). The side chain atoms of Asp113 form a '''[https://en.wikipedia.org/wiki/Hydrogen_bond hydrogen bond]''' network with Thr156, Ser361, Ser362, and Gln365 instead, which prevents the coordination of a Na<sup>+</sup> ion<ref name ="SPGP"/> (Figure 2).  
<scene name='72/721548/Trp321/1'>Trp321</scene>, which is positioned at the bottom of the <scene name='72/721547/Hydrophobic_binding_pocket/5'>hydrophobic binding pocket</scene>, sets the top of the <scene name='72/721548/Na_bind_pocket/12'> sodium binding pocket</scene>. The Na<sup>+</sup> ion binding pocket acts as a negative allosteric site for G protein activity <ref name="SPGP"/>. When Na<sup>+</sup> enters the Na<sup>+</sup> ion binding pocket, it coordinates with Asp95, Gln131, Ser135, and Asp113, decreasing the signaling activity of NTSR1 <ref name="SPGP"/>. When NTSR1 is in its active state, the Na<sup>+</sup> ion binding pocket is collapsed. This prevents the regulation of protein activity through a Na<sup>+</sup> ion, as the Na<sup>+</sup> ion is unable to coordinate via a salt bridge to Asp113 (Figure 2). The side chain atoms of Asp113 form a '''[https://en.wikipedia.org/wiki/Hydrogen_bond hydrogen bond]''' network with Thr156, Ser361, Ser362, and Gln365 instead, which prevents the coordination of a Na<sup>+</sup> ion<ref name ="SPGP"/> (Figure 2).  


==Activation of NTSR1==
==Activation of NTSR1==

Revision as of 02:57, 22 April 2016

An interactive view of the class A GPCR, NTSR1 (blue). This protein gets its activity from binding to the 13 amino acid ligand, NTS (red).

Drag the structure with the mouse to rotate

References