Sandbox Reserved 1176: Difference between revisions

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On the extracellular side of the protein is the
On the extracellular side of the protein is the
<scene name='72/721547/Hydrophobic_binding_pocket/5'>hydrophobic binding pocket</scene>. <ref name="SONT"/>
<scene name='72/721547/Hydrophobic_binding_pocket/5'>hydrophobic binding pocket</scene>. <ref name="SONT"/>
One key residue in this pocket is a Phenylalanine at position 358, which takes part in a network of hydrophobic stacking interactions<ref name="SPGP"/>. These interactions stabilize the Trp321 and Tyr324 residues allowing Tyr324 to interact with the '''[https://en.wikipedia.org/wiki/C-terminus C-terminal]'''  
One key residue in this pocket is a Phenylalanine at position 358, which takes part in a network of hydrophobic stacking interactions<ref name="SPGP"/>. These interactions stabilize the Trp321 and Tyr324 residues allowing <scene name='72/721547/Ligand_protein_interactions/8'>Tyr324</scene> to interact with the '''[https://en.wikipedia.org/wiki/C-terminus C-terminal]'''  
<scene name='72/721547/Hydrophobic_binding_pocket/6'>Leu13 residue of the NTS ligand</scene>
<scene name='72/721547/Hydrophobic_binding_pocket/6'>Leu13 residue of the NTS ligand</scene>
via '''[https://en.wikipedia.org/wiki/Van_der_Waals_force Van der Waals interactions]''' .<ref name="SONT"/><ref name="SPGP"/>
via '''[https://en.wikipedia.org/wiki/Van_der_Waals_force Van der Waals interactions]''' .<ref name="SONT"/><ref name="SPGP"/>
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====Leu310====
====Leu310====


<scene name='72/721547/Ligand_protein_interactions/8'>Leu310</scene> is crucial for interactions with the G alpha subunit by positioning Arg167 in the conserved <scene name='72/721548/Dery_motif/2'>D/ERY motif</scene><ref name="SPGP"/>. When Leu310 was substituted with alanine, Arg167 was able to form a stabilizing hydrogen bonding network with  Asn257, Ser164 and Gly306, which oriented Arg167 in a position that was unfavorable for contacting the G alpha subunit. When residue 310 was converted back to leucine, this hydrogen bonding network was sterically unfavorable and Arg167 interacted with the G alpha subunit<ref name="SPGP"/>  leading to the transduction of several different signals involved in dopamine regulation<ref name="Schizophrenia"/>, leptin signlaing<ref name="Mice"/>, and tumor growth<ref name="cancer"/>.  
is crucial for interactions with the G alpha subunit by positioning Arg167 in the conserved <scene name='72/721548/Dery_motif/2'>D/ERY motif</scene><ref name="SPGP"/>. When Leu310 was substituted with alanine, Arg167 was able to form a stabilizing hydrogen bonding network with  Asn257, Ser164 and Gly306, which oriented Arg167 in a position that was unfavorable for contacting the G alpha subunit. When residue 310 was converted back to leucine, this hydrogen bonding network was sterically unfavorable and Arg167 interacted with the G alpha subunit<ref name="SPGP"/>  leading to the transduction of several different signals involved in dopamine regulation<ref name="Schizophrenia"/>, leptin signlaing<ref name="Mice"/>, and tumor growth<ref name="cancer"/>.  
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Revision as of 04:22, 22 April 2016

An interactive view of the class A GPCR, NTSR1 (blue). This protein gets its activity from binding to the 13 amino acid ligand, NTS (red).

Drag the structure with the mouse to rotate

References