5j0k: Difference between revisions
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==De novo design of protein homo-oligomers with modular hydrogen bond network-mediated specificity== | |||
<StructureSection load='5j0k' size='340' side='right' caption='[[5j0k]], [[Resolution|resolution]] 1.54Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[5j0k]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J0K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5J0K FirstGlance]. <br> | |||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j0k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j0k OCA], [http://pdbe.org/5j0k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j0k RCSB], [http://www.ebi.ac.uk/pdbsum/5j0k PDBsum]</span></td></tr> | |||
</table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
In nature, structural specificity in DNA and proteins is encoded differently: In DNA, specificity arises from modular hydrogen bonds in the core of the double helix, whereas in proteins, specificity arises largely from buried hydrophobic packing complemented by irregular peripheral polar interactions. Here, we describe a general approach for designing a wide range of protein homo-oligomers with specificity determined by modular arrays of central hydrogen-bond networks. We use the approach to design dimers, trimers, and tetramers consisting of two concentric rings of helices, including previously not seen triangular, square, and supercoiled topologies. X-ray crystallography confirms that the structures overall, and the hydrogen-bond networks in particular, are nearly identical to the design models, and the networks confer interaction specificity in vivo. The ability to design extensive hydrogen-bond networks with atomic accuracy enables the programming of protein interaction specificity for a broad range of synthetic biology applications; more generally, our results demonstrate that, even with the tremendous diversity observed in nature, there are fundamentally new modes of interaction to be discovered in proteins. | |||
De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity.,Boyken SE, Chen Z, Groves B, Langan RA, Oberdorfer G, Ford A, Gilmore JM, Xu C, DiMaio F, Pereira JH, Sankaran B, Seelig G, Zwart PH, Baker D Science. 2016 May 6;352(6286):680-7. doi: 10.1126/science.aad8865. PMID:27151862<ref>PMID:27151862</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
[[Category: | </div> | ||
[[Category: | <div class="pdbe-citations 5j0k" style="background-color:#fffaf0;"></div> | ||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Baker, D]] | |||
[[Category: Boyken, S]] | |||
[[Category: Chen, Z]] | |||
[[Category: DiMaio, F]] | |||
[[Category: Ford, A]] | |||
[[Category: Gilmore, J]] | [[Category: Gilmore, J]] | ||
[[Category: Groves, B]] | [[Category: Groves, B]] | ||
[[Category: Langan, R A]] | |||
[[Category: Oberdorfer, G]] | [[Category: Oberdorfer, G]] | ||
[[Category: Pereira, J H]] | |||
[[Category: Sankaran, B]] | [[Category: Sankaran, B]] | ||
[[Category: Seelig, G]] | [[Category: Seelig, G]] | ||
[[Category: Xu, C]] | [[Category: Xu, C]] | ||
[[Category: | [[Category: Zwart, P H]] | ||
[[Category: | [[Category: De novo design]] | ||
[[Category: | [[Category: De novo protein]] | ||
[[Category: Rosetta]] | |||
