5d08: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 5d08 is ~~ON HOLD until Oct 03 2017~~

==Crystal structure of selenomethionine-labeled epoxyqueuosine reductase==

~~Authors~~: ~~Dowling~~, D.P., ~~Miles~~, Z.D., ~~Kohrer~~, C., ~~Bandarian, V~~., ~~Drennan, C~~.L.

== Structural highlights ==

<table><tr><td colspan='2'>[[5d08]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D08 OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D08 FirstGlance].

~~Description: Crystal structure of selenomethionine-labeled epoxyqueuosine reductase~~

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=B12:COBALAMIN'>B12</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>

[[~~Category~~: ~~Unreleased Structures~~]]

<tr id='NonStdRes'><td class="sblockLbl">[[Non-Standard_Residue|NonStd Res:]]</td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>

[~~[Category~~: ~~Drennan, C.L]~~]

<tr id='related'><td class="sblockLbl">[[Related_structure|Related:]]</td><td class="sblockDat">[[5d0a|5d0a]], [[5d0b|5d0b]]</td></tr>

[[Category: ~~Miles, Z.D~~]]

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Epoxyqueuosine_reductase Epoxyqueuosine reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.99.6 1.17.99.6] </td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d08 OCA], [http://pdbe.org/5d08 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d08 RCSB], [http://www.ebi.ac.uk/pdbsum/5d08 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d08 ProSAT]</td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/QUEG_BACSU QUEG_BACSU]] Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).[HAMAP-Rule:MF_00916]<ref>PMID:21502530</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Epoxyqueuosine reductase]]

[[Category: Bandarian, V]]

[[Category: Dowling, D P]]

[[Category: Drennan, C L]]

[[Category: Kohrer, C]]

[[Category: ~~Dowling~~, D.P]]

[[Category: Miles, Z D]]

[[Category: B12]]

[[Category: Heat-domain]]

[[Category: Oxidoreductase]]

[[Category: Queuosine]]

[[Category: Trna modification]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 5d08 is ON HOLD  until Oct 03 2017
+==Crystal structure of selenomethionine-labeled epoxyqueuosine reductase==
+<StructureSection load='5d08' size='340' side='right' caption='[[5d08]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-Authors: Dowling, D.P., Miles, Z.D., Kohrer, C., Bandarian, V., Drennan, C.L.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5d08]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D08 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D08 FirstGlance]. <br>
-Description: Crystal structure of selenomethionine-labeled epoxyqueuosine reductase
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=B12:COBALAMIN'>B12</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Drennan, C.L]]
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5d0a|5d0a]], [[5d0b|5d0b]]</td></tr>
-[[Category: Miles, Z.D]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Epoxyqueuosine_reductase Epoxyqueuosine reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.17.99.6 1.17.99.6] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d08 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d08 OCA], [http://pdbe.org/5d08 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d08 RCSB], [http://www.ebi.ac.uk/pdbsum/5d08 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d08 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/QUEG_BACSU QUEG_BACSU]] Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).[HAMAP-Rule:MF_00916]<ref>PMID:21502530</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Epoxyqueuosine reductase]]
 [[Category: Bandarian, V]]
+[[Category: Dowling, D P]]
+[[Category: Drennan, C L]]
 [[Category: Kohrer, C]]
-[[Category: Dowling, D.P]]
+[[Category: Miles, Z D]]
+[[Category: B12]]
+[[Category: Heat-domain]]
+[[Category: Oxidoreductase]]
+[[Category: Queuosine]]
+[[Category: Trna modification]]