4nq1: Difference between revisions

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==Legionella pneumophila dihydrodipicolinate synthase with first substrate pyruvate bound in the active site==
==Legionella pneumophila dihydrodipicolinate synthase with first substrate pyruvate bound in the active site==
<StructureSection load='4nq1' size='340' side='right' caption='[[4nq1]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
<StructureSection load='4nq1' size='340' side='right'caption='[[4nq1]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4nq1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Legp2 Legp2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NQ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NQ1 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4nq1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila_2300/99_Alcoy Legionella pneumophila 2300/99 Alcoy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NQ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NQ1 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=KPI:(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC+ACID'>KPI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KPI:(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC+ACID'>KPI</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4nq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nq1 OCA], [https://pdbe.org/4nq1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4nq1 RCSB], [https://www.ebi.ac.uk/pdbsum/4nq1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4nq1 ProSAT]</span></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dapA, lpa_03319 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=423212 LEGP2])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-hydroxy-tetrahydrodipicolinate_synthase 4-hydroxy-tetrahydrodipicolinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.7 4.3.3.7] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4nq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4nq1 OCA], [http://pdbe.org/4nq1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4nq1 RCSB], [http://www.ebi.ac.uk/pdbsum/4nq1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4nq1 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
 
[[http://www.uniprot.org/uniprot/D5T7I7_LEGP2 D5T7I7_LEGP2]] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA) (By similarity).[HAMAP-Rule:MF_00418][SAAS:SAAS020624_004_011311]  
==See Also==
*[[Dihydrodipicolinate synthase|Dihydrodipicolinate synthase]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: 4-hydroxy-tetrahydrodipicolinate synthase]]
[[Category: Large Structures]]
[[Category: Legp2]]
[[Category: Legionella pneumophila 2300/99 Alcoy]]
[[Category: Paxman, J J]]
[[Category: Paxman JJ]]
[[Category: Siddiqui, T]]
[[Category: Siddiqui T]]
[[Category: Dihydrodipicolinate synthesis]]
[[Category: Lyase]]
[[Category: Lysine biosynthesis]]
[[Category: Pyruvate]]
[[Category: Tim barrel]]

Revision as of 08:41, 11 January 2023

Legionella pneumophila dihydrodipicolinate synthase with first substrate pyruvate bound in the active site

4nq1, resolution 1.65Å

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