4hta: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
Line 1: Line 1:


==The structure of the karrikin insensitive (KAI2) protein in Arabidopsis thaliana==
==The structure of the karrikin insensitive (KAI2) protein in Arabidopsis thaliana==
<StructureSection load='4hta' size='340' side='right' caption='[[4hta]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='4hta' size='340' side='right'caption='[[4hta]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4hta]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HTA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HTA FirstGlance]. <br>
<table><tr><td colspan='2'>[[4hta]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HTA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HTA FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4hrx|4hrx]], [[4hry|4hry]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4hta FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hta OCA], [https://pdbe.org/4hta PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4hta RCSB], [https://www.ebi.ac.uk/pdbsum/4hta PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4hta ProSAT]</span></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">F6G17.120, AT4G37470 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hta FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hta OCA], [http://pdbe.org/4hta PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4hta RCSB], [http://www.ebi.ac.uk/pdbsum/4hta PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4hta ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/KAI2_ARATH KAI2_ARATH]] Involved in seed germination and seedling development. Essential for plant responses to karrikins, a class of butenolide compounds, structurally similar to strigolactones, released from burning vegetation that stimulate seed germination and enhance seedling photomorphogenesis. KAI2 is not required for strigolactone-mediated responses, but MAX2 is necessary for responses to karrikins and strigolactones.<ref>PMID:20864454</ref> <ref>PMID:22357928</ref> <ref>PMID:23142794</ref> <ref>PMID:23301669</ref>
[https://www.uniprot.org/uniprot/KAI2_ARATH KAI2_ARATH] Involved in seed germination and seedling development. Essential for plant responses to karrikins, a class of butenolide compounds, structurally similar to strigolactones, released from burning vegetation that stimulate seed germination and enhance seedling photomorphogenesis. KAI2 is not required for strigolactone-mediated responses, but MAX2 is necessary for responses to karrikins and strigolactones.<ref>PMID:20864454</ref> <ref>PMID:22357928</ref> <ref>PMID:23142794</ref> <ref>PMID:23301669</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Arath]]
[[Category: Arabidopsis thaliana]]
[[Category: Bond, C S]]
[[Category: Large Structures]]
[[Category: Bythell-Douglas, R]]
[[Category: Bond CS]]
[[Category: Flematti, G R]]
[[Category: Bythell-Douglas R]]
[[Category: Scaffidi, A]]
[[Category: Flematti GR]]
[[Category: Smith, S M]]
[[Category: Scaffidi A]]
[[Category: Waters, M T]]
[[Category: Smith SM]]
[[Category: Alpha/beta hydrolase]]
[[Category: Waters MT]]
[[Category: Hydrolase]]
[[Category: Signaling protein]]