4f4q: Difference between revisions

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==Crystal structure of M. smegmatis DprE1 in complex with FAD and covalently bound BTZ043==
==Crystal structure of M. smegmatis DprE1 in complex with FAD and covalently bound BTZ043==
<StructureSection load='4f4q' size='340' side='right' caption='[[4f4q]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
<StructureSection load='4f4q' size='340' side='right'caption='[[4f4q]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4f4q]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycs2 Mycs2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F4Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F4Q FirstGlance]. <br>
<table><tr><td colspan='2'>[[4f4q]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycolicibacterium_smegmatis_MC2_155 Mycolicibacterium smegmatis MC2 155]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F4Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4F4Q FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0SK:8-(HYDROXYAMINO)-2-[(2S)-2-METHYL-1,4-DIOXA-8-AZASPIRO[4.5]DEC-8-YL]-6-(TRIFLUOROMETHYL)-4H-1,3-BENZOTHIAZIN-4-ONE'>0SK</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0SK:8-(HYDROXYAMINO)-2-[(2S)-2-METHYL-1,4-DIOXA-8-AZASPIRO[4.5]DEC-8-YL]-6-(TRIFLUOROMETHYL)-4H-1,3-BENZOTHIAZIN-4-ONE'>0SK</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MSMEG_6382 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=246196 MYCS2])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4f4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f4q OCA], [https://pdbe.org/4f4q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4f4q RCSB], [https://www.ebi.ac.uk/pdbsum/4f4q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4f4q ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f4q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f4q OCA], [http://pdbe.org/4f4q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4f4q RCSB], [http://www.ebi.ac.uk/pdbsum/4f4q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4f4q ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DPRE1_MYCS2 DPRE1_MYCS2] Component of the DprE1-DprE2 complex that catalyzes the 2-step epimerization of decaprenyl-phospho-ribose (DPR) to decaprenyl-phospho-arabinose (DPA), a key precursor that serves as the arabinose donor required for the synthesis of cell-wall arabinans (PubMed:22188377). DprE1 catalyzes the first step of epimerization, namely FAD-dependent oxidation of the C2' hydroxyl of DPR to yield the keto intermediate decaprenyl-phospho-2'-keto-D-arabinose (DPX) (PubMed:22188377). The intermediate DPX is then transferred to DprE2 subunit of the epimerase complex, most probably through a 'substrate channel' at the interface of DprE1-DprE2 complex (By similarity). Can also use farnesyl-phosphoryl-beta-D-ribofuranose (FPR) as substrate in vitro (PubMed:22188377, PubMed:22956199). Appears to be essential for the growth of M.smegmatis (PubMed:21346818).[UniProtKB:P9WJF1]<ref>PMID:21346818</ref> <ref>PMID:22188377</ref> <ref>PMID:22956199</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Mycs2]]
[[Category: Large Structures]]
[[Category: Binda, C]]
[[Category: Mycolicibacterium smegmatis MC2 155]]
[[Category: Chiarelli, L]]
[[Category: Binda C]]
[[Category: Cole, S T]]
[[Category: Chiarelli L]]
[[Category: Mattevi, A]]
[[Category: Cole ST]]
[[Category: Molteni, E]]
[[Category: Mattevi A]]
[[Category: Neres, J]]
[[Category: Molteni E]]
[[Category: Pojer, F]]
[[Category: Neres J]]
[[Category: Riccardi, G]]
[[Category: Pojer F]]
[[Category: Btz043 covalently bound to cys394]]
[[Category: Riccardi G]]
[[Category: Fad domain]]
[[Category: Oxidase]]
[[Category: Oxidoreductase]]
Retrieved from "https://proteopedia.org/4f4q"