4e0d: Difference between revisions

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==Binary complex of Bacillus DNA Polymerase I Large Fragment E658A and duplex DNA==
==Binary complex of Bacillus DNA Polymerase I Large Fragment E658A and duplex DNA==
<StructureSection load='4e0d' size='340' side='right' caption='[[4e0d]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
<StructureSection load='4e0d' size='340' side='right'caption='[[4e0d]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4e0d]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Geoka Geoka]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E0D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4E0D FirstGlance]. <br>
<table><tr><td colspan='2'>[[4e0d]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E0D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4E0D FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DCP:2-DEOXYCYTIDINE-5-TRIPHOSPHATE'>DCP</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DCP:2-DEOXYCYTIDINE-5-TRIPHOSPHATE'>DCP</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4e0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e0d OCA], [https://pdbe.org/4e0d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4e0d RCSB], [https://www.ebi.ac.uk/pdbsum/4e0d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4e0d ProSAT]</span></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4dqq|4dqq]], [[4dqr|4dqr]], [[4dqs|4dqs]], [[4ds4|4ds4]], [[4ds5|4ds5]], [[4dse|4dse]], [[4dsf|4dsf]], [[4dqp|4dqp]], [[4dqi|4dqi]]</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GK2730, GYMC61_0787, polA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=235909 GEOKA])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4e0d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e0d OCA], [http://pdbe.org/4e0d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4e0d RCSB], [http://www.ebi.ac.uk/pdbsum/4e0d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4e0d ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[[https://www.uniprot.org/uniprot/Q5KWC1_GEOKA Q5KWC1_GEOKA]]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 4e0d" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 4e0d" style="background-color:#fffaf0;"></div>
==See Also==
*[[DNA polymerase|DNA polymerase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: DNA-directed DNA polymerase]]
[[Category: Geobacillus kaustophilus HTA426]]
[[Category: Geoka]]
[[Category: Large Structures]]
[[Category: Beese, L S]]
[[Category: Synthetic construct]]
[[Category: Wang, W]]
[[Category: Beese LS]]
[[Category: Dna polymerase i]]
[[Category: Wang W]]
[[Category: Protein-dna complex]]
[[Category: Transferase-dna complex]]
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