Structure superposition tools: Difference between revisions
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revised sections on TopMatch (additional reference, ...); added section on TopSearch |
m add superpose and fix JSmol duplicated in TopSearch list |
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:This server came to my attention after this article was written. I hope to evaluate it in the future -- or someone else is encouraged to do so. [[User:Eric Martz|Eric Martz]] 00:30, 7 July 2011 (IDT) | :This server came to my attention after this article was written. I hope to evaluate it in the future -- or someone else is encouraged to do so. [[User:Eric Martz|Eric Martz]] 00:30, 7 July 2011 (IDT) | ||
===SuperPose=== | |||
*Server: [http://wishart.biology.ualberta.ca/SuperPose/ SuperPose] | |||
*Publication (2004)<ref name="superpose">PMID: 15215457 </ref> | |||
*Help on server: ? | |||
*Structure neighbors (pre-calculated): ? | |||
*Visualization: ? | |||
*Does alignment involve sequence comparison: ? | |||
*Rigid alignment: ? | |||
*Flexible alignment: ? | |||
*Multiple alignment: YES. | |||
*Structure-based sequence alignment: ? | |||
*Search with uploaded models: YES | |||
*Color by deviation: ? | |||
*Special features: ? | |||
===TM-Align=== | ===TM-Align=== | ||
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*Help on server: YES. | *Help on server: YES. | ||
*Structure neighbors (pre-calculated): YES. | *Structure neighbors (pre-calculated): YES. | ||
*Does alignment involve sequence comparison? NO. | *Does alignment involve sequence comparison? NO. | ||
*Rigid alignment: YES. | *Rigid alignment: YES. | ||
