Jmol: Difference between revisions

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Eric Martz (talk | contribs)
ConfirmAccount, Editor, Print3D, Tester, Bureaucrats, journal, Administrators
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Eric Martz (talk | contribs)
ConfirmAccount, Editor, Print3D, Tester, Bureaucrats, journal, Administrators
30,122 edits
No edit summary
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'''JSmol''' has proven quite satisfactory for interactive displays of most macromolecules in Proteopedia, and is the default. This avoids the need for Protepedia users to [[Installing_and_enabling_Java|install and enable Java]]. The Java applet Jmol [[User:Eric_Martz/JSmol_Notes#JSmol_is_slower_than_Jmol|performs much faster]], but this enhanced performance is not needed unless the model contains >~30,000 atoms, or multiple larger models (see [[NMR]]).  
'''JSmol''' has proven quite satisfactory for interactive displays of most macromolecules in Proteopedia, and is the default. This avoids the need for Protepedia users to [[Installing_and_enabling_Java|install and enable Java]]. The Java applet Jmol [[User:Eric_Martz/JSmol_Notes#JSmol_is_slower_than_Jmol|performs much faster]], but this enhanced performance is not needed unless the model contains >~30,000 atoms, or multiple larger models (see [[NMR]]).  
Performance of JSmol [[User:Eric_Martz/JSmol_Notes#Poor_performance_in_Internet_Explorer.2C_Edge.2C_Chrome_and_Opera|varies with the web browser employed]]. Poorest performance occurs with Internet Explorer and Edge, which are therfore not recommended when using Proteopedia. Most recently (in early 2017), Firefox and Safari significantly outperform Chrome.


Should you wish to try the Java applet, see [[Using Java for Rendering Structures]]. [[Java]], particularly in web browsers, may be a [[Java#Java is a security threat|security risk]], and some [[Java#How to be as safe as possible with Java|simple precautions are recommended]].
Should you wish to try the Java applet, see [[Using Java for Rendering Structures]]. [[Java]], particularly in web browsers, may be a [[Java#Java is a security threat|security risk]], and some [[Java#How to be as safe as possible with Java|simple precautions are recommended]].
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