5fz8: Difference between revisions

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'''Unreleased structure'''


The entry 5fz8 is ON HOLD  until Paper Publication
==Crystal structure of the catalytic domain of human JARID1B in complex with malate==
 
<StructureSection load='5fz8' size='340' side='right' caption='[[5fz8]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
Authors: Nowak, R., Krojer, T., Johansson, C., Gileadi, C., Kupinska, K., Strain-Damerell, C., Szykowska, A., Von Delft, F., Burgess-Brown, N.A., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Oppermann, U.
== Structural highlights ==
 
<table><tr><td colspan='2'>[[5fz8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FZ8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FZ8 FirstGlance]. <br>
Description: Crystal structure of the catalytic domain of human JARID1B in complex with malate
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=LMR:(2S)-2-HYDROXYBUTANEDIOIC+ACID'>LMR</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Unreleased Structures]]
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5fy4|5fy4]], [[5fy5|5fy5]], [[5fy7|5fy7]], [[5fy8|5fy8]], [[5fy9|5fy9]], [[5fyb|5fyb]], [[5fyc|5fyc]], [[5fyh|5fyh]], [[5fyi|5fyi]], [[5fym|5fym]], [[5fys|5fys]], [[5fyt|5fyt]], [[5fyu|5fyu]], [[5fyv|5fyv]], [[5fyy|5fyy]], [[5fyz|5fyz]], [[5fz0|5fz0]], [[5fz1|5fz1]], [[5fz3|5fz3]], [[5fz4|5fz4]], [[5fz6|5fz6]], [[5fz7|5fz7]], [[5fz9|5fz9]], [[5fza|5fza]], [[5fzb|5fzb]], [[5fzc|5fzc]], [[5fzd|5fzd]], [[5fze|5fze]], [[5fzf|5fzf]], [[5fzg|5fzg]], [[5fzh|5fzh]], [[5fzi|5fzi]], [[5fzk|5fzk]], [[5fzl|5fzl]], [[5fzm|5fzm]], [[5fzo|5fzo]]</td></tr>
[[Category: Nowak, R]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fz8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fz8 OCA], [http://pdbe.org/5fz8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fz8 RCSB], [http://www.ebi.ac.uk/pdbsum/5fz8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fz8 ProSAT]</span></td></tr>
[[Category: Arrowsmith, C.H]]
</table>
== Function ==
[[http://www.uniprot.org/uniprot/KDM5B_HUMAN KDM5B_HUMAN]] Histone demethylase that demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-9' or H3 'Lys-27'. Demethylates trimethylated, dimethylated and monomethylated H3 'Lys-4'. Acts as a transcriptional corepressor for FOXG1B and PAX9. Favors the proliferation of breast cancer cells by repressing tumor suppressor genes such as BRCA1 and HOXA5. In contrast, may act as a tumor suppressor for melanoma.<ref>PMID:12657635</ref> <ref>PMID:16645588</ref> <ref>PMID:17320161</ref> <ref>PMID:17363312</ref> 
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Arrowsmith, C H]]
[[Category: Bountra, C]]
[[Category: Burgess-Brown, N A]]
[[Category: Delft, F Von]]
[[Category: Edwards, A M]]
[[Category: Gileadi, C]]
[[Category: Gileadi, C]]
[[Category: Oppermann, U]]
[[Category: Szykowska, A]]
[[Category: Burgess-Brown, N.A]]
[[Category: Von Delft, F]]
[[Category: Edwards, A.M]]
[[Category: Johansson, C]]
[[Category: Johansson, C]]
[[Category: Strain-Damerell, C]]
[[Category: Krojer, T]]
[[Category: Krojer, T]]
[[Category: Bountra, C]]
[[Category: Kupinska, K]]
[[Category: Kupinska, K]]
[[Category: Nowak, R]]
[[Category: Oppermann, U]]
[[Category: Strain-Damerell, C]]
[[Category: Szykowska, A]]
[[Category: Jarid1b]]
[[Category: Oxidoreductase]]
[[Category: Plu1]]
[[Category: Tca intermediate]]
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