5gnq: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 5gnq ~~is ON HOLD until Paper Publication~~

==Crystal structure of replisomal dimer of DNA polymerase from bacteriophage RB69 with DNA duplexes==

~~Authors~~: ~~Youn, H~~.-S., ~~Lee~~, Y., ~~Kang~~, J.Y., ~~An, J~~.Y.~~, Lee, J~~.-G., ~~Park, K~~.R., ~~Lim~~, J.J., ~~Wang, J~~., ~~Eom, S~~.H.

== Structural highlights ==

<table><tr><td colspan='2'>[[5gnq]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GNQ OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GNQ FirstGlance].

~~Description~~: ~~Crystal structure of replisomal dimer of~~ DNA polymerase ~~from bacteriophage RB69 with~~ DNA ~~duplexes~~

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DUP:2-DEOXYURIDINE+5-ALPHA,BETA-IMIDO-TRIPHOSPHATE'>DUP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>

[[Category: ~~Unreleased Structures~~]]

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </td></tr>

[[Category: An, J.Y]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gnq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gnq OCA], [http://pdbe.org/5gnq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gnq RCSB], [http://www.ebi.ac.uk/pdbsum/5gnq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gnq ProSAT]</td></tr>

[[Category: ~~Youn~~, H~~.-S]]~~

</table>

~~[[Category: Park, K.R~~]]

== Function ==

[[Category: Kang, J.Y]]

[[http://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69]] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.

~~[[Category: Lim, J.J~~]]

__TOC__

[[Category: Lee, J.-G]]

</StructureSection>

[[Category: DNA-directed DNA polymerase]]

[[Category: An, J Y]]

[[Category: Eom, S H]]

[[Category: Kang, J Y]]

[[Category: Lee, J G]]

[[Category: Lee, Y]]

[[Category: ~~Eom~~, ~~S.H~~]]

[[Category: Lim, J J]]

[[Category: Park, K R]]

[[Category: Wang, J]]

[[Category: Youn, H S]]

[[Category: Dimer]]

[[Category: Dna complex]]

[[Category: Dna polymerase]]

[[Category: Transferase-dna complex]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 5gnq is ON HOLD  until Paper Publication
+==Crystal structure of replisomal dimer of DNA polymerase from bacteriophage RB69 with DNA duplexes==
+<StructureSection load='5gnq' size='340' side='right' caption='[[5gnq]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-Authors: Youn, H.-S., Lee, Y., Kang, J.Y., An, J.Y., Lee, J.-G., Park, K.R., Lim, J.J., Wang, J., Eom, S.H.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5gnq]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GNQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GNQ FirstGlance]. <br>
-Description: Crystal structure of replisomal dimer of DNA polymerase from bacteriophage RB69 with DNA duplexes
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5GP:GUANOSINE-5-MONOPHOSPHATE'>5GP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DUP:2-DEOXYURIDINE+5-ALPHA,BETA-IMIDO-TRIPHOSPHATE'>DUP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-[[Category: An, J.Y]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gnq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gnq OCA], [http://pdbe.org/5gnq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gnq RCSB], [http://www.ebi.ac.uk/pdbsum/5gnq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gnq ProSAT]</span></td></tr>
-[[Category: Youn, H.-S]]
+</table>
-[[Category: Park, K.R]]
+== Function ==
-[[Category: Kang, J.Y]]
+[[http://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69]] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
-[[Category: Lim, J.J]]
+__TOC__
-[[Category: Lee, J.-G]]
+</StructureSection>
+[[Category: DNA-directed DNA polymerase]]
+[[Category: An, J Y]]
+[[Category: Eom, S H]]
+[[Category: Kang, J Y]]
+[[Category: Lee, J G]]
 [[Category: Lee, Y]]
-[[Category: Eom, S.H]]
+[[Category: Lim, J J]]
+[[Category: Park, K R]]
 [[Category: Wang, J]]
+[[Category: Youn, H S]]
+[[Category: Dimer]]
+[[Category: Dna complex]]
+[[Category: Dna polymerase]]
+[[Category: Transferase-dna complex]]