5x06: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 5x06 is ~~ON HOLD until Paper Publication~~

==DNA replication regulation protein==

~~Authors~~: ~~Kim~~, J., ~~Cho~~, Y.

== Structural highlights ==

<table><tr><td colspan='2'>[[5x06]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X06 OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X06 FirstGlance].

~~Description~~: DNA replication ~~regulation~~ protein

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>

[[Category: ~~Unreleased Structures~~]]

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x06 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x06 OCA], [http://pdbe.org/5x06 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x06 RCSB], [http://www.ebi.ac.uk/pdbsum/5x06 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x06 ProSAT]</td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/DPO3B_ECO57 DPO3B_ECO57]] Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.[UniProtKB:P0A988] [[http://www.uniprot.org/uniprot/HDA_ECO57 HDA_ECO57]] Mediates the interaction of DNA replication initiator protein DnaA with DNA polymerase subunit beta sliding clamp (dnaN). Stimulates hydrolysis of ATP-DnaA to ADP-DnaA, rendering DnaA inactive for reinitiation, a process called regulatory inhibition of DnaA or RIDA (By similarity).

__TOC__

</StructureSection>

[[Category: DNA-directed DNA polymerase]]

[[Category: Cho, Y]]

[[Category: Kim, J]]

[[Category: ~~Cho, Y~~]]

[[Category: Dna replication]]

[[Category: Replication]]

[[Category: Rida]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 5x06 is ON HOLD  until Paper Publication
+==DNA replication regulation protein==
+<StructureSection load='5x06' size='340' side='right' caption='[[5x06]], [[Resolution|resolution]] 3.24&Aring;' scene=''>
-Authors: Kim, J., Cho, Y.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5x06]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X06 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X06 FirstGlance]. <br>
-Description: DNA replication regulation protein
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x06 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x06 OCA], [http://pdbe.org/5x06 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x06 RCSB], [http://www.ebi.ac.uk/pdbsum/5x06 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x06 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/DPO3B_ECO57 DPO3B_ECO57]] Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.[UniProtKB:P0A988] [[http://www.uniprot.org/uniprot/HDA_ECO57 HDA_ECO57]] Mediates the interaction of DNA replication initiator protein DnaA with DNA polymerase subunit beta sliding clamp (dnaN). Stimulates hydrolysis of ATP-DnaA to ADP-DnaA, rendering DnaA inactive for reinitiation, a process called regulatory inhibition of DnaA or RIDA (By similarity).
+__TOC__
+</StructureSection>
+[[Category: DNA-directed DNA polymerase]]
+[[Category: Cho, Y]]
 [[Category: Kim, J]]
-[[Category: Cho, Y]]
+[[Category: Dna replication]]
+[[Category: Replication]]
+[[Category: Rida]]