1xsp: Difference between revisions

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[[Image:1xsp.gif|left|200px]]
[[Image:1xsp.gif|left|200px]]


{{Structure
<!--
|PDB= 1xsp |SIZE=350|CAPTION= <scene name='initialview01'>1xsp</scene>, resolution 2.20&Aring;
The line below this paragraph, containing "STRUCTURE_1xsp", creates the "Structure Box" on the page.
|SITE=
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
|LIGAND= <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PPV:PYROPHOSPHATE'>PPV</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span>
or leave the SCENE parameter empty for the default display.
|GENE= POLL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
-->
|DOMAIN=
{{STRUCTURE_1xsp|  PDB=1xsp |  SCENE= }}  
|RELATEDENTRY=[[1xsl|1XSL]], [[1xsn|1XSN]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsp OCA], [http://www.ebi.ac.uk/pdbsum/1xsp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1xsp RCSB]</span>
}}


'''Crystal Structure of human DNA polymerase lambda in complex with nicked DNA and pyrophosphate'''
'''Crystal Structure of human DNA polymerase lambda in complex with nicked DNA and pyrophosphate'''
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[[Category: Kunkel, T A.]]
[[Category: Kunkel, T A.]]
[[Category: Pedersen, L C.]]
[[Category: Pedersen, L C.]]
[[Category: dna polymerase lambda]]
[[Category: Dna polymerase lambda]]
[[Category: helix-hairpin-helix]]
[[Category: Helix-hairpin-helix]]
[[Category: protein-dna complex]]
[[Category: Protein-dna complex]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May  3 15:27:46 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 00:54:09 2008''

Revision as of 12:27, 3 May 2008

File:1xsp.gif

Template:STRUCTURE 1xsp

Crystal Structure of human DNA polymerase lambda in complex with nicked DNA and pyrophosphate


Overview

Pol lambda is a family X member believed to fill short gaps during DNA repair. Here we report crystal structures of Pol lambda representing three steps in filling a single-nucleotide gap. These structures indicate that, unlike other DNA polymerases, Pol lambda does not undergo large subdomain movements during catalysis, and they provide a clear characterization of the geometry and stereochemistry of the in-line nucleotidyl transfer reaction.

About this Structure

1XSP is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

A closed conformation for the Pol lambda catalytic cycle., Garcia-Diaz M, Bebenek K, Krahn JM, Kunkel TA, Pedersen LC, Nat Struct Mol Biol. 2005 Jan;12(1):97-8. Epub 2004 Dec 19. PMID:15608652 Page seeded by OCA on Sat May 3 15:27:46 2008

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