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==Crystal structure of YokD protein from Bacillus subtilis==
==Crystal structure of YokD protein from Bacillus subtilis==
<StructureSection load='2nyg' size='340' side='right' caption='[[2nyg]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
<StructureSection load='2nyg' size='340' side='right'caption='[[2nyg]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2nyg]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NYG FirstGlance]. <br>
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NYG FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene></td></tr>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyg OCA], [https://pdbe.org/2nyg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nyg RCSB], [https://www.ebi.ac.uk/pdbsum/2nyg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nyg ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2nyg TOPSAN]</span></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">yokD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nyg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyg OCA], [http://pdbe.org/2nyg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nyg RCSB], [http://www.ebi.ac.uk/pdbsum/2nyg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nyg ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2nyg TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
[[http://www.uniprot.org/uniprot/YOKD_BACSU YOKD_BACSU]] May contribute to antibiotic resistance.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/2nyg_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/2nyg_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacillus globigii migula 1900]]
[[Category: Large Structures]]
[[Category: Burley, S K]]
[[Category: Burley SK]]
[[Category: Eswaramoorthy, S]]
[[Category: Eswaramoorthy S]]
[[Category: Madegowda, M]]
[[Category: Madegowda M]]
[[Category: Structural genomic]]
[[Category: Swaminathan S]]
[[Category: Swaminathan, S]]
[[Category: Aminoglycoside 3-n-acetyltransferase]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
[[Category: Pfam02522]]
[[Category: PSI, Protein structure initiative]]
[[Category: Unknown function]]

Revision as of 15:55, 8 June 2021

Crystal structure of YokD protein from Bacillus subtilis

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