Practical Guide to Homology Modeling: Difference between revisions

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Eric Martz (talk | contribs)
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At [http://uniprot.org UniProt.Org], find your protein and click on '''Structure''' (blue button at the left).
At [http://uniprot.org UniProt.Org], find your protein and click on '''Structure''' (blue button at the left).


*If]] there is a section ''3D Structure Databases'' with a column labeled '''PDB entry''' containing 4-character [[PDB code|PDB IDs, these are empirical structures for your protein. Pay attention to the “Positions” column, which gives the sequence number range covered by each model.
*If there is a section ''3D Structure Databases'' with a column labeled '''PDB entry''' containing 4-character [[PDB code|PDB IDs]], these are empirical structures for your protein. Pay attention to the “Positions” column, which gives the sequence number range covered by each model.
** To explore one of these models, write down its 4-character [[PDB code]]. Then see [[#How To Explore 3D Models]] below.
** To explore one of these models, write down its 4-character [[PDB code]]. Then see [[#How To Explore 3D Models]] below.
*If there is no “PDB entry” column, then there are no sequence-identical empirical structures for your protein. Then try the Advanced search method below.
*If there is no “PDB entry” column, then there are no sequence-identical empirical structures for your protein. Then try the Advanced search method below.