3mjo: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
Line 1: Line 1:


==Small subunit (R2F) of native ribonucleotide reductase from Corynebacterium ammoniagenes==
==Small subunit (R2F) of native ribonucleotide reductase from Corynebacterium ammoniagenes==
<StructureSection load='3mjo' size='340' side='right' caption='[[3mjo]], [[Resolution|resolution]] 1.36&Aring;' scene=''>
<StructureSection load='3mjo' size='340' side='right'caption='[[3mjo]], [[Resolution|resolution]] 1.36&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[3mjo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_ammoniagenes"_cooke_and_keith_1927 "bacterium ammoniagenes" cooke and keith 1927]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MJO FirstGlance]. <br>
<table><tr><td colspan='2'>[[3mjo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_ammoniagenes Corynebacterium ammoniagenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MJO FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.36&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nrdF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1697 "Bacterium ammoniagenes" Cooke and Keith 1927])</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mjo OCA], [http://pdbe.org/3mjo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mjo RCSB], [http://www.ebi.ac.uk/pdbsum/3mjo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mjo ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mjo OCA], [https://pdbe.org/3mjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mjo RCSB], [https://www.ebi.ac.uk/pdbsum/3mjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mjo ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/O69274_CORAM O69274_CORAM]] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).[PIRNR:PIRNR000355]  
[https://www.uniprot.org/uniprot/O69274_CORAM O69274_CORAM] Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity).[PIRNR:PIRNR000355]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
   <jmolCheckbox>
   <jmolCheckbox>
     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mj/3mjo_consurf.spt"</scriptWhenChecked>
     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mj/3mjo_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
     <text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 29:
</div>
</div>
<div class="pdbe-citations 3mjo" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3mjo" style="background-color:#fffaf0;"></div>
==See Also==
*[[Ribonucleotide reductase 3D structures|Ribonucleotide reductase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacterium ammoniagenes cooke and keith 1927]]
[[Category: Corynebacterium ammoniagenes]]
[[Category: Auling, G]]
[[Category: Large Structures]]
[[Category: Lubitz, W]]
[[Category: Auling G]]
[[Category: Ogata, H]]
[[Category: Lubitz W]]
[[Category: Stehr, M]]
[[Category: Ogata H]]
[[Category: Stolle, P]]
[[Category: Stehr M]]
[[Category: Dna-precursor biosynthesis]]
[[Category: Stolle P]]
[[Category: Metallocofactor]]
[[Category: Mn ribonucleotide reductase]]
[[Category: Oxidoreductase]]
[[Category: Radical enzyme]]
[[Category: Rnr]]
[[Category: Split signal]]