5gvz: Difference between revisions

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==Crystal structure of Peptidyl-tRNA hydrolase from Vibrio cholerae in space group C2221 at resolution 1.75A.==
==Crystal structure of Peptidyl-tRNA hydrolase from Vibrio cholerae in space group C2221 at resolution 1.75A.==
<StructureSection load='5gvz' size='340' side='right' caption='[[5gvz]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
<StructureSection load='5gvz' size='340' side='right'caption='[[5gvz]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5gvz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibc3 Vibc3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GVZ FirstGlance]. <br>
<table><tr><td colspan='2'>[[5gvz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O395 Vibrio cholerae O395]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GVZ FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2CO:S-HYDROPEROXYCYSTEINE'>2CO</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2CO:S-HYDROPEROXYCYSTEINE'>2CO</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pth, VC0395_A1761, VC395_2298 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=345073 VIBC3])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gvz OCA], [https://pdbe.org/5gvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gvz RCSB], [https://www.ebi.ac.uk/pdbsum/5gvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gvz ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aminoacyl-tRNA_hydrolase Aminoacyl-tRNA hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.29 3.1.1.29] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gvz OCA], [http://pdbe.org/5gvz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gvz RCSB], [http://www.ebi.ac.uk/pdbsum/5gvz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gvz ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/PTH_VIBC3 PTH_VIBC3]] The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.  
[https://www.uniprot.org/uniprot/PTH_VIBC3 PTH_VIBC3] The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.
 
==See Also==
*[[Peptidyl-tRNA hydrolase|Peptidyl-tRNA hydrolase]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Aminoacyl-tRNA hydrolase]]
[[Category: Large Structures]]
[[Category: Vibc3]]
[[Category: Vibrio cholerae O395]]
[[Category: Arora, A]]
[[Category: Arora A]]
[[Category: Kabra, A]]
[[Category: Kabra A]]
[[Category: Pal, R K]]
[[Category: Pal RK]]
[[Category: Shahid, S]]
[[Category: Shahid S]]
[[Category: Hydrolase]]
[[Category: Peptidyl-trna hydrolase]]
[[Category: Vibrio cholerae]]