2dd1: Difference between revisions

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[[Image:2dd1.gif|left|200px]]
[[Image:2dd1.gif|left|200px]]


{{Structure
<!--
|PDB= 2dd1 |SIZE=350|CAPTION= <scene name='initialview01'>2dd1</scene>
The line below this paragraph, containing "STRUCTURE_2dd1", creates the "Structure Box" on the page.
|SITE=
You may change the PDB parameter (which sets the PDB file loaded into the applet)
|LIGAND= <scene name='pdbligand=A:ADENOSINE-5&#39;-MONOPHOSPHATE'>A</scene>, <scene name='pdbligand=C:CYTIDINE-5&#39;-MONOPHOSPHATE'>C</scene>, <scene name='pdbligand=G:GUANOSINE-5&#39;-MONOPHOSPHATE'>G</scene>, <scene name='pdbligand=PR5:PURINE+RIBOSIDE-5&#39;-MONOPHOSPHATE'>PR5</scene>, <scene name='pdbligand=U:URIDINE-5&#39;-MONOPHOSPHATE'>U</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY=  
or leave the SCENE parameter empty for the default display.
|GENE=  
-->
|DOMAIN=
{{STRUCTURE_2dd1| PDB=2dd1  | SCENE= }}  
|RELATEDENTRY=[[2dd2|2DD2]], [[2dd3|2DD3]], [[1xv0|1XV0]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dd1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dd1 OCA], [http://www.ebi.ac.uk/pdbsum/2dd1 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2dd1 RCSB]</span>
}}


'''Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG'''
'''Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG'''
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==About this Structure==
==About this Structure==
2DD1 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DD1 OCA].  
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DD1 OCA].  


==Reference==
==Reference==
An alternating sheared AA pair and elements of stability for a single sheared purine-purine pair flanked by sheared GA pairs in RNA., Chen G, Kennedy SD, Qiao J, Krugh TR, Turner DH, Biochemistry. 2006 Jun 6;45(22):6889-903. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16734425 16734425]
An alternating sheared AA pair and elements of stability for a single sheared purine-purine pair flanked by sheared GA pairs in RNA., Chen G, Kennedy SD, Qiao J, Krugh TR, Turner DH, Biochemistry. 2006 Jun 6;45(22):6889-903. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16734425 16734425]
[[Category: Protein complex]]
[[Category: Chen, G.]]
[[Category: Chen, G.]]
[[Category: Kennedy, S D.]]
[[Category: Kennedy, S D.]]
[[Category: Krugh, T R.]]
[[Category: Krugh, T R.]]
[[Category: Turner, D H.]]
[[Category: Turner, D H.]]
[[Category: a-minor motif]]
[[Category: A-minor motif]]
[[Category: k-turn motif]]
[[Category: K-turn motif]]
[[Category: secondary structure of rna]]
[[Category: Secondary structure of rna]]
[[Category: thermodynamics of molecular recognition]]
[[Category: Thermodynamics of molecular recognition]]
[[Category: three consecutive sheared ga pair]]
[[Category: Three consecutive sheared ga pair]]
 
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