Proteopedia:Problems: Difference between revisions
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'''Structure sections seems to interfere with browsing back:''' Possible to make it so the structure section goes back to where user was in article and not to the top of the structure section when using browser ‘Back’ button? Example page, the [[Ribosome|Ribosome page]], if you click link to scene about structural detail of active site and then try to go back. Or would [[Ribosome|Ribosome page]] page maybe be good test of better design. It seems someone put everything after start in a structure section?[[User:Wayne Decatur|Wayne Decatur]] 16:46, 23 January 2018 (UTC) | '''Structure sections seems to interfere with browsing back:''' Possible to make it so the structure section goes back to where user was in article and not to the top of the structure section when using browser ‘Back’ button? Example page, the [[Ribosome|Ribosome page]], if you click link to scene about structural detail of active site and then try to go back. Or would [[Ribosome|Ribosome page]] page maybe be good test of better design. It seems someone put everything after start in a structure section?[[User:Wayne Decatur|Wayne Decatur]] 16:46, 23 January 2018 (UTC) | ||
'''Scene links that have green displayed text that includes non-alphabetical characters like ampersands and greek letters''' do not display properly --[[User:Eran Hodis|Eran Hodis]] 17:24, 12 June 2008 (IDT) (So if you try to add angstrom sign by code Å sometimes it will cause that green link not to show up and sometimes even throws an XML error when you try to save the page. --[[User:Wayne Decatur|Wayne Decatur]] 4:27, 28 September 2009 (EST) ) | <span style="background-color:yellow;color:green">'''SOLVED'''</span> '''Scene links that have green displayed text that includes non-alphabetical characters like ampersands and greek letters''' do not display properly --[[User:Eran Hodis|Eran Hodis]] 17:24, 12 June 2008 (IDT) (So if you try to add angstrom sign by code Å sometimes it will cause that green link not to show up and sometimes even throws an XML error when you try to save the page. --[[User:Wayne Decatur|Wayne Decatur]] 4:27, 28 September 2009 (EST) ) Accented characters are Ok. Use HTML entities for ampersand, greek and other special characters [[https://www.w3schools.com/charsets/ref_utf_greek.asp]] like &beta; for β. [[User:Jaime Prilusky|Jaime Prilusky]] 13:06, 17 October 2018 (UTC) | ||
'''Models with >100,000 atoms''' fail to display due to java memory limitations. These are <0.1% of the PDB. I suggest that a box be inserted automatically (from a template) on such pages that explains why Jmol remains blank. We should test whether increasing the memory allocated to java reduces this problem, and if so, provide an explanation of how to increase java memory in Win and OS X. See also [http://bioportal.weizmann.ac.il/oca-docs/fgij/bigpdb.htm tests with big PDB files] and a [http://bip.weizmann.ac.il/oca-docs/PDBRecNamStats/PDBSizeDistribution.html list of the largest files in the PDB]. [[User:Eric Martz|Eric Martz]] 19:20, 13 April 2008 (IDT) | '''Models with >100,000 atoms''' fail to display due to java memory limitations. These are <0.1% of the PDB. I suggest that a box be inserted automatically (from a template) on such pages that explains why Jmol remains blank. We should test whether increasing the memory allocated to java reduces this problem, and if so, provide an explanation of how to increase java memory in Win and OS X. See also [http://bioportal.weizmann.ac.il/oca-docs/fgij/bigpdb.htm tests with big PDB files] and a [http://bip.weizmann.ac.il/oca-docs/PDBRecNamStats/PDBSizeDistribution.html list of the largest files in the PDB]. [[User:Eric Martz|Eric Martz]] 19:20, 13 April 2008 (IDT) | ||
