6f2b: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 6f2b is ~~ON HOLD until Paper Publication~~

==Crystal structure of the complex Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO1 with Fe(II)/alpha-ketoglutarate==

~~Authors~~: ~~Isabet~~, T., ~~Stura~~, E.A., ~~Legrand, P~~., ~~Zaparucha, A~~.~~, Bastard, K~~.

== Structural highlights ==

<table><tr><td colspan='2'>[[6f2b]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F2B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6F2B FirstGlance]. <br>

~~Description~~: ~~Crystal structure of the complex Fe(II)~~/~~alpha~~-ketoglutarate dependent dioxygenase ~~KDO1 with Fe~~(II)/~~alpha-ketoglutarate~~

</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>

[[Category: ~~Unreleased Structures~~]]

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6f2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f2b OCA], [http://pdbe.org/6f2b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6f2b RCSB], [http://www.ebi.ac.uk/pdbsum/6f2b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6f2b ProSAT]</span></td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/LYS3O_CATAD LYS3O_CATAD]] Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (3S)-3-hydroxy-L-lysine. Can also use (5R)-5-hydroxy-L-lysine as substrate, but neither D-lysine nor L-ornithine.[REFERENCE:2]

__TOC__

</StructureSection>

[[Category: Bastard, K]]

[[Category: Isabet, T]]

[[Category: Legrand, P]]

[[Category: ~~Isabet~~, ~~T]]~~

[[Category: Stura, E A]]

~~[[Category: Bastard, K~~]]

[[Category: Zaparucha, A]]

[[Category: ~~Stura, E.A~~]]

[[Category: Dioxygenase]]

[[Category: Enzyme]]

[[Category: Feii alphakg form]]

[[Category: Oxidoreductase]]

[[Category: Oxydoreductase]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 6f2b is ON HOLD  until Paper Publication
+==Crystal structure of the complex Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO1 with Fe(II)/alpha-ketoglutarate==
+<StructureSection load='6f2b' size='340' side='right' caption='[[6f2b]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-Authors: Isabet, T., Stura, E.A., Legrand, P., Zaparucha, A., Bastard, K.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6f2b]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6F2B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6F2B FirstGlance]. <br>
-Description: Crystal structure of the complex Fe(II)/alpha-ketoglutarate dependent dioxygenase KDO1 with Fe(II)/alpha-ketoglutarate
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6f2b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6f2b OCA], [http://pdbe.org/6f2b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6f2b RCSB], [http://www.ebi.ac.uk/pdbsum/6f2b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6f2b ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/LYS3O_CATAD LYS3O_CATAD]] Alpha-ketoglutarate-dependent dioxygenase that in vitro catalyzes the regio- and stereoselective hydroxylation of L-lysine, leading to (3S)-3-hydroxy-L-lysine. Can also use (5R)-5-hydroxy-L-lysine as substrate, but neither D-lysine nor L-ornithine.[REFERENCE:2]
+__TOC__
+</StructureSection>
+[[Category: Bastard, K]]
+[[Category: Isabet, T]]
 [[Category: Legrand, P]]
-[[Category: Isabet, T]]
+[[Category: Stura, E A]]
-[[Category: Bastard, K]]
 [[Category: Zaparucha, A]]
-[[Category: Stura, E.A]]
+[[Category: Dioxygenase]]
+[[Category: Enzyme]]
+[[Category: Feii alphakg form]]
+[[Category: Oxidoreductase]]
+[[Category: Oxydoreductase]]