6c3d: Difference between revisions

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'''Unreleased structure'''


The entry 6c3d is ON HOLD  until Paper Publication
==O2-, PLP-dependent L-arginine hydroxylase RohP quinonoid II complex==
<StructureSection load='6c3d' size='340' side='right' caption='[[6c3d]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6c3d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C3D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C3D FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=EMS:(2E,4E)-5-carbamimidamido-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}pent-4-enoic+acid'>EMS</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6c3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c3d OCA], [http://pdbe.org/6c3d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c3d RCSB], [http://www.ebi.ac.uk/pdbsum/6c3d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c3d ProSAT]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Enzymes that catalyze hydroxylation of unactivated carbons normally contain heme and nonheme iron cofactors. By contrast, how a pyridoxal phosphate (PLP)-dependent enzyme could catalyze such a hydroxylation was unknown. Here, we investigate RohP, a PLP-dependent enzyme that converts l-arginine to (S)-4-hydroxy-2-ketoarginine. We determine that the RohP reaction consumes oxygen with stoichiometric release of H2O2. To understand this unusual chemistry, we obtain approximately 1.5 A resolution structures that capture intermediates along the catalytic cycle. Our data suggest that RohP carries out a four-electron oxidation and a stereospecific alkene hydration to give the (S)-configured product. Together with our earlier studies on an O2, PLP-dependent l-arginine oxidase, our work suggests that there is a shared pathway leading to both oxidized and hydroxylated products from l-arginine.


Authors: Hedges, J.B., Ryan, K.S.
Snapshots of the Catalytic Cycle of an O2, Pyridoxal Phosphate-Dependent Hydroxylase.,Hedges JB, Kuatsjah E, Du YL, Eltis LD, Ryan KS ACS Chem Biol. 2018 Feb 28. doi: 10.1021/acschembio.8b00039. PMID:29466666<ref>PMID:29466666</ref>


Description: O2-, PLP-dependent L-arginine hydroxylase RohP quinonoid II complex
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
[[Category: Ryan, K.S]]
<div class="pdbe-citations 6c3d" style="background-color:#fffaf0;"></div>
[[Category: Hedges, J.B]]
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Hedges, J B]]
[[Category: Ryan, K S]]
[[Category: Biosynthetic protein]]
[[Category: O2-]]
[[Category: Plp-dependent hydroxylase]]

Revision as of 05:07, 8 March 2018

O2-, PLP-dependent L-arginine hydroxylase RohP quinonoid II complex

6c3d, resolution 1.55Å

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