5k6m: Difference between revisions

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==Structure of a GH3 b-glIcosidase from cow rumen metagenome in complex with glucose==
==Structure of a GH3 b-glIcosidase from cow rumen metagenome in complex with glucose==
<StructureSection load='5k6m' size='340' side='right' caption='[[5k6m]], [[Resolution|resolution]] 2.17&Aring;' scene=''>
<StructureSection load='5k6m' size='340' side='right'caption='[[5k6m]], [[Resolution|resolution]] 2.17&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5k6m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Environmental_sequence Environmental sequence]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K6M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5K6M FirstGlance]. <br>
<table><tr><td colspan='2'>[[5k6m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Metagenome Metagenome]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K6M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5K6M FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.17&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5k6l|5k6l]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">glyA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=256318 environmental sequence])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5k6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k6m OCA], [https://pdbe.org/5k6m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5k6m RCSB], [https://www.ebi.ac.uk/pdbsum/5k6m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5k6m ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5k6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k6m OCA], [http://pdbe.org/5k6m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k6m RCSB], [http://www.ebi.ac.uk/pdbsum/5k6m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k6m ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Beta-glucosidase]]
[[Category: Large Structures]]
[[Category: Environmental sequence]]
[[Category: Ramirez-Escudero, M]]
[[Category: Sanz-Aparicio, J]]
[[Category: B-glicosidase]]
[[Category: Functional food]]
[[Category: Glucose]]
[[Category: Glycoside hydrolase]]
[[Category: Hydrolase]]
[[Category: Metagenome]]
[[Category: Metagenome]]
[[Category: Microbiota]]
[[Category: Ramirez-Escudero M]]
[[Category: Prebiotic]]
[[Category: Sanz-Aparicio J]]