6cnp: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The~~ entry ~~6cnp~~ is ~~ON HOLD~~

==Crystal structure of MBD2 complex with methylated CpG island==

~~Authors~~: Xu, C., ~~Min~~, J., ~~Structural Genomics Consortium (SGC)~~

== Structural highlights ==

<table><tr><td colspan='2'>[[6cnp]] is a 6 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=6c2k 6c2k]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CNP OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CNP FirstGlance].

~~Description~~: ~~Crystal structure~~ of ~~MBD2 complex with methylated~~ CpG ~~island~~

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>

[[Category: ~~Unreleased Structures~~]]

<tr id='NonStdRes'><td class="sblockLbl">[[Non-Standard_Residue|NonStd Res:]]</td><td class="sblockDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cnp OCA], [http://pdbe.org/6cnp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cnp RCSB], [http://www.ebi.ac.uk/pdbsum/6cnp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cnp ProSAT]</td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/MBD2_HUMAN MBD2_HUMAN]] Binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides. Binds hemimethylated DNA as well. Recruits histone deacetylases and DNA methyltransferases. Acts as transcriptional repressor and plays a role in gene silencing. Functions as a scaffold protein, targeting GATAD2A and GATAD2B to chromatin to promote repression. May enhance the activation of some unmethylated cAMP-responsive promoters.<ref>PMID:10471499</ref> <ref>PMID:10947852</ref> <ref>PMID:12665568</ref> <ref>PMID:16415179</ref> <ref>PMID:24307175</ref> <ref>PMID:9774669</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Min, J]]

[[Category: Structural genomic]]

[[Category: Xu, C]]

[[Category: ~~Min, J~~]]

[[Category: Sgc]]

[[Category: ~~Structural Genomics Consortium (Sgc)~~]]

[[Category: Transcription-dna complex]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 6cnp is ON HOLD
+==Crystal structure of MBD2 complex with methylated CpG island==
+<StructureSection load='6cnp' size='340' side='right' caption='[[6cnp]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-Authors: Xu, C., Min, J., Structural Genomics Consortium (SGC)
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6cnp]] is a 6 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=6c2k 6c2k]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CNP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CNP FirstGlance]. <br>
-Description: Crystal structure of MBD2 complex with methylated CpG island
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cnp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cnp OCA], [http://pdbe.org/6cnp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cnp RCSB], [http://www.ebi.ac.uk/pdbsum/6cnp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cnp ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/MBD2_HUMAN MBD2_HUMAN]] Binds CpG islands in promoters where the DNA is methylated at position 5 of cytosine within CpG dinucleotides. Binds hemimethylated DNA as well. Recruits histone deacetylases and DNA methyltransferases. Acts as transcriptional repressor and plays a role in gene silencing. Functions as a scaffold protein, targeting GATAD2A and GATAD2B to chromatin to promote repression. May enhance the activation of some unmethylated cAMP-responsive promoters.<ref>PMID:10471499</ref> <ref>PMID:10947852</ref> <ref>PMID:12665568</ref> <ref>PMID:16415179</ref> <ref>PMID:24307175</ref> <ref>PMID:9774669</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Min, J]]
+[[Category: Structural genomic]]
 [[Category: Xu, C]]
-[[Category: Min, J]]
+[[Category: Sgc]]
-[[Category: Structural Genomics Consortium (Sgc)]]
+[[Category: Transcription-dna complex]]