5zqf: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 5zqf is ~~ON HOLD until Paper Publication~~

==Crystal structure of human topoisomerase II beta in complex with 5-iodouridine-containing-DNA in space group P3221==

~~Authors~~: ~~Chen~~, S.F., ~~Wang~~, Y.R., ~~Chan~~, N.L.

== Structural highlights ==

<table><tr><td colspan='2'>[[5zqf]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZQF OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZQF FirstGlance].

~~Description~~: ~~Crystal structure~~ of ~~human topoisomerase~~ II ~~beta~~ in complex ~~with 5~~-~~iodouridine~~-~~containing~~-~~DNA in space group P3221~~

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>

~~[[Category: Unreleased Structures]]~~

<tr id='NonStdRes'><td class="sblockLbl">[[Non-Standard_Residue|NonStd Res:]]</td><td class="sblockDat"><scene name='pdbligand=IU:5-IODOURIDINE-5-MONOPHOSPHATE'>IU</scene></td></tr>

[[Category: Chan, N.L]]

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </td></tr>

[[Category: Chen, S.F]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zqf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zqf OCA], [http://pdbe.org/5zqf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zqf RCSB], [http://www.ebi.ac.uk/pdbsum/5zqf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zqf ProSAT]</td></tr>

[[Category: Wang, Y.R]]

</table>

== Function ==

[[http://www.uniprot.org/uniprot/TOP2B_HUMAN TOP2B_HUMAN]] Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks. Indirectly involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.<ref>PMID:10684600</ref> <ref>PMID:12837248</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Chan, N L]]

[[Category: Chen, S F]]

[[Category: Wang, Y R]]

[[Category: Cleavage complex]]

[[Category: Dna-gate]]

[[Category: Isomerase-dna complex]]

[[Category: Type ii topoisomerase]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 5zqf is ON HOLD  until Paper Publication
+==Crystal structure of human topoisomerase II beta in complex with 5-iodouridine-containing-DNA in space group P3221==
+<StructureSection load='5zqf' size='340' side='right' caption='[[5zqf]], [[Resolution|resolution]] 3.87&Aring;' scene=''>
-Authors: Chen, S.F., Wang, Y.R., Chan, N.L.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[5zqf]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZQF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZQF FirstGlance]. <br>
-Description: Crystal structure of human topoisomerase II beta in complex with 5-iodouridine-containing-DNA in space group P3221
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=IU:5-IODOURIDINE-5-MONOPHOSPHATE'>IU</scene></td></tr>
-[[Category: Chan, N.L]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </span></td></tr>
-[[Category: Chen, S.F]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zqf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zqf OCA], [http://pdbe.org/5zqf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zqf RCSB], [http://www.ebi.ac.uk/pdbsum/5zqf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zqf ProSAT]</span></td></tr>
-[[Category: Wang, Y.R]]
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/TOP2B_HUMAN TOP2B_HUMAN]] Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks. Indirectly involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.<ref>PMID:10684600</ref> <ref>PMID:12837248</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Chan, N L]]
+[[Category: Chen, S F]]
+[[Category: Wang, Y R]]
+[[Category: Cleavage complex]]
+[[Category: Dna-gate]]
+[[Category: Isomerase-dna complex]]
+[[Category: Type ii topoisomerase]]