User:Wayne Decatur/Sequence analysis tools: Difference between revisions
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==BLAST+== | ==BLAST+== | ||
* [https://github.com/fomightez/blast-binder Blast-binder - Launchable Jupyter environment for running command line-based BLAST via Binder.]. That page also links to the main BLAST resources there. The launched notebooks illustrate ways to easily work with the output in Python. | * [https://github.com/fomightez/blast-binder Blast-binder - Launchable Jupyter environment for running command line-based BLAST via Binder.]. That page also links to the main BLAST resources there. The launched notebooks illustrate ways to easily work with the output in Python. | ||
==Circos== | |||
* [https://github.com/fomightez/circos-binder Circos - binderized Circos so it is actively available in a browser with one click to launch Jupyter environment for Circos via Binder.]. That page also links to the main Circos resources there. The launched notebooks illustrate ways to easily work with the output in Python. | |||
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* [http://biit.cs.ut.ee/gprofiler/gconvert.cgi g:Convert] - Gene ID Converter. Handles yeast and a very large list of other organisms. | * [http://biit.cs.ut.ee/gprofiler/gconvert.cgi g:Convert] - Gene ID Converter. Handles yeast and a very large list of other organisms. | ||
* [https://github.com/fhcrc/seqmagick seqmagick-An imagemagick-like frontend to Biopython SeqIO], can convert from fasta to phylip, etc. | * [https://github.com/fhcrc/seqmagick seqmagick-An imagemagick-like frontend to Biopython SeqIO], can convert from fasta to phylip, etc. | ||
==Random sequence generators== | ==Random sequence generators== | ||
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==Orthology== | ==Orthology== | ||
* [http://eggnogdb.embl.de/#/app/home EggNOG] - A database of orthologous groups and functional annotation | * [http://eggnogdb.embl.de/#/app/home EggNOG] - A database of orthologous groups and functional annotation | ||
==Pattern Matching== | ==Pattern Matching== | ||
