User:Wayne Decatur/Sequence analysis tools: Difference between revisions
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* [http://sequenceconversion.bugaco.com/converter/biology/sequences/clustal_to_fasta.php Sequence conversion Provided by bugaco.com] - a lot of conversion choices with easy interface. When I had interleaved clustal format it converted nicely to a straight fasta listing for the sequence for every organism. | * [http://sequenceconversion.bugaco.com/converter/biology/sequences/clustal_to_fasta.php Sequence conversion Provided by bugaco.com] - a lot of conversion choices with easy interface. When I had interleaved clustal format it converted nicely to a straight fasta listing for the sequence for every organism. | ||
* [http://toolkit.tuebingen.mpg.de/reformat Reformat utility of Max Planck Institute for Developmental Biology Bioinformatics Toolkit] converts sequences or multiple sequence alignments to various forms. | * [http://toolkit.tuebingen.mpg.de/reformat Reformat utility of Max Planck Institute for Developmental Biology Bioinformatics Toolkit] converts sequences or multiple sequence alignments to various forms. | ||
* [https://www.hiv.lanl.gov/content/sequence/FORMAT_CONVERSION/form.html?sample_input=1 Format Converter] - converts nucleotide and protein sequences in various formats to a lot of other formats. | |||
* [http://bioinformatics.org/sms2/three_to_one.html Three to One] converts three letter amino acid sequence translations to single letter translations. | * [http://bioinformatics.org/sms2/three_to_one.html Three to One] converts three letter amino acid sequence translations to single letter translations. | ||
* [http://bioinformatics.org/sms2/one_to_three.html One to Three] converts single letter amino acid sequence translations to three letter translations. | * [http://bioinformatics.org/sms2/one_to_three.html One to Three] converts single letter amino acid sequence translations to three letter translations. | ||
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* [http://biit.cs.ut.ee/gprofiler/gconvert.cgi g:Convert] - Gene ID Converter. Handles yeast and a very large list of other organisms. | * [http://biit.cs.ut.ee/gprofiler/gconvert.cgi g:Convert] - Gene ID Converter. Handles yeast and a very large list of other organisms. | ||
* [https://github.com/fhcrc/seqmagick seqmagick-An imagemagick-like frontend to Biopython SeqIO], can convert from fasta to phylip, etc. | * [https://github.com/fhcrc/seqmagick seqmagick-An imagemagick-like frontend to Biopython SeqIO], can convert from fasta to phylip, etc. | ||
==Random sequence generators== | ==Random sequence generators== | ||
