6dzg: Difference between revisions

Line 1:

~~'''Unreleased structure'''~~

~~The entry~~ 6dzg is ~~ON HOLD until Paper Publication~~

==Crystal structure of polyphosphate kinase 2 class I (SMc02148) in complex with ADP==

~~Authors~~: ~~Nocek~~, B., ~~Joachimiak~~, A., ~~Ruszkowski~~, M., ~~Midwest Center for Structural Genomics (MCSG)~~

== Structural highlights ==

<table><tr><td colspan='2'>[[6dzg]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DZG OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DZG FirstGlance].

~~Description~~: ~~Crystal structure of~~ polyphosphate ~~kinase 2 class I~~ (~~SMc02148~~) in ~~complex with ADP~~

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene></td></tr>

[[Category: ~~Unreleased~~ Structures]]

<tr id='NonStdRes'><td class="sblockLbl">[[Non-Standard_Residue|NonStd Res:]]</td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>

[[Category: ~~Ruszkowski, M]]~~

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </td></tr>

~~[[Category: Midwest Center For Structural Genomics (Mcsg)~~]]

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dzg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dzg OCA], [http://pdbe.org/6dzg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dzg RCSB], [http://www.ebi.ac.uk/pdbsum/6dzg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dzg ProSAT]</td></tr>

</table>

== Function ==

[[http://www.uniprot.org/uniprot/PK21A_RHIME PK21A_RHIME]] Uses inorganic polyphosphate (polyP) as a donor to convert ADP to ATP. Can also convert GDP to GTP, with lower efficiency. Cannot dephosphorylate ATP in the presence of polyP.<ref>PMID:19001261</ref>

== References ==

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Polyphosphate kinase]]

[[Category: Joachimiak, A]]

[[Category: Structural genomic]]

[[Category: Nocek, B]]

[[Category: Ruszkowski, M]]

[[Category: Kinase]]

[[Category: Mcsg]]

[[Category: Psi-biology]]

[[Category: Transferase]]

Navigation menu

Page actions

Page actions

Personal tools

Navigation

Search

Tools

@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 6dzg is ON HOLD  until Paper Publication
+==Crystal structure of polyphosphate kinase 2 class I (SMc02148) in complex with ADP==
+<StructureSection load='6dzg' size='340' side='right'caption='[[6dzg]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
-Authors: Nocek, B., Joachimiak, A., Ruszkowski, M., Midwest Center for Structural Genomics (MCSG)
+== Structural highlights ==
+<table><tr><td colspan='2'>[[6dzg]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DZG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DZG FirstGlance]. <br>
-Description: Crystal structure of polyphosphate kinase 2 class I (SMc02148) in complex with ADP
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MLT:D-MALATE'>MLT</scene></td></tr>
-[[Category: Unreleased Structures]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Ruszkowski, M]]
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polyphosphate_kinase Polyphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.1 2.7.4.1] </span></td></tr>
-[[Category: Midwest Center For Structural Genomics (Mcsg)]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dzg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dzg OCA], [http://pdbe.org/6dzg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dzg RCSB], [http://www.ebi.ac.uk/pdbsum/6dzg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dzg ProSAT]</span></td></tr>
+</table>
+== Function ==
+[[http://www.uniprot.org/uniprot/PK21A_RHIME PK21A_RHIME]] Uses inorganic polyphosphate (polyP) as a donor to convert ADP to ATP. Can also convert GDP to GTP, with lower efficiency. Cannot dephosphorylate ATP in the presence of polyP.<ref>PMID:19001261</ref>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Polyphosphate kinase]]
 [[Category: Joachimiak, A]]
+[[Category: Structural genomic]]
 [[Category: Nocek, B]]
+[[Category: Ruszkowski, M]]
+[[Category: Kinase]]
+[[Category: Mcsg]]
+[[Category: Psi-biology]]
+[[Category: Transferase]]