Introduction to molecular visualization: Difference between revisions
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==Visualizing Structural Features== | ==Visualizing Structural Features== | ||
===Overall Features=== | |||
Combinations of representations and color schemes are useful to highlight | Combinations of representations and color schemes are useful to highlight | ||
* [[Protein primary, secondary, tertiary and quaternary structure|Secondary, tertiary, and quaternary structure]] | * [[Protein primary, secondary, tertiary and quaternary structure|Secondary, tertiary, and quaternary structure]] | ||
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The above features can be most easily displayed in the ''Views'' tab of [[FirstGlance in Jmol]]. Evolutionary conservation can sometimes be seen with [[How to see conserved regions|one click in Proteopedia]], or in other cases requires [[ConSurf Quick Analysis Procedure|submitting a job to the ConSurf server]]. For a specific protein, such features can be displayed by using Proteopedia's [[Scene Authoring Tools]] and then attached to green links when authoring a page. | The above features can be most easily displayed in the ''Views'' tab of [[FirstGlance in Jmol]]. Evolutionary conservation can sometimes be seen with [[How to see conserved regions|one click in Proteopedia]], or in other cases requires [[ConSurf Quick Analysis Procedure|submitting a job to the ConSurf server]]. For a specific protein, such features can be displayed by using Proteopedia's [[Scene Authoring Tools]] and then attached to green links when authoring a page. | ||
===Covalent and Non-Covalent Bonds=== | |||
[[FirstGlance in Jmol]] provides "one-click" routines, in its ''Tools'' tab, to highlight | |||
*Disulfide bonds | |||
*[[Salt bridges]] | |||
*[[Cation-pi interactions]] | |||
*Non-covalent interactions with any substructure that you select, using ''Contacts & Non-Covalent Interactions'' in the ''Tools'' tab. | |||
==See Also== | ==See Also== | ||
