5z9z: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
Line 1: Line 1:


==The C-terminal RRM domain of Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 (E329A/E330A/E332A)==
==The C-terminal RRM domain of Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 (E329A/E330A/E332A)==
<StructureSection load='5z9z' size='340' side='right' caption='[[5z9z]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
<StructureSection load='5z9z' size='340' side='right'caption='[[5z9z]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5z9z]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z9Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Z9Z FirstGlance]. <br>
<table><tr><td colspan='2'>[[5z9z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z9Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Z9Z FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.049&#8491;</td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SDN1, At3g50100, F3A4.180 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5z9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z9z OCA], [https://pdbe.org/5z9z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5z9z RCSB], [https://www.ebi.ac.uk/pdbsum/5z9z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5z9z ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5z9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z9z OCA], [http://pdbe.org/5z9z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z9z RCSB], [http://www.ebi.ac.uk/pdbsum/5z9z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z9z ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/SDN1_ARATH SDN1_ARATH]] 3'-5' exonuclease degrading single-stranded small RNAs.<ref>PMID:18787168</ref>
[https://www.uniprot.org/uniprot/SDN1_ARATH SDN1_ARATH] 3'-5' exonuclease degrading single-stranded small RNAs.<ref>PMID:18787168</ref>  
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Arath]]
[[Category: Arabidopsis thaliana]]
[[Category: Cao, C]]
[[Category: Large Structures]]
[[Category: Chen, J]]
[[Category: Cao C]]
[[Category: Chen, X]]
[[Category: Chen J]]
[[Category: Gan, J]]
[[Category: Chen X]]
[[Category: Gu, J]]
[[Category: Gan J]]
[[Category: Huang, Y]]
[[Category: Gu J]]
[[Category: Liu, L]]
[[Category: Huang Y]]
[[Category: Ma, J]]
[[Category: Liu L]]
[[Category: Ruan, W]]
[[Category: Ma J]]
[[Category: You, C]]
[[Category: Ruan W]]
[[Category: Zhang, L]]
[[Category: You C]]
[[Category: Rna binding protein]]
[[Category: Zhang L]]
[[Category: Rna recognition motif]]
Retrieved from "https://proteopedia.org/5z9z"