2qvr: Difference between revisions

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[[Image:2qvr.jpg|left|200px]]
[[Image:2qvr.jpg|left|200px]]


{{Structure
<!--
|PDB= 2qvr |SIZE=350|CAPTION= <scene name='initialview01'>2qvr</scene>, resolution 2.180&Aring;
The line below this paragraph, containing "STRUCTURE_2qvr", creates the "Structure Box" on the page.
|SITE=
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
|LIGAND= <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=FDP:FRUCTOSE-2,6-DIPHOSPHATE'>FDP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Fructose-bisphosphatase Fructose-bisphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.11 3.1.3.11] </span>
or leave the SCENE parameter empty for the default display.
|GENE= fbp, fdp ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
-->
|DOMAIN=
{{STRUCTURE_2qvr|  PDB=2qvr |  SCENE= }}  
|RELATEDENTRY=[[2gq1|2GQ1]], [[2owz|2OWZ]], [[2ox3|2OX3]], [[2q8m|2Q8M]], [[2qvu|2QVU]], [[2qvv|2QVV]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qvr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qvr OCA], [http://www.ebi.ac.uk/pdbsum/2qvr PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qvr RCSB]</span>
}}


'''E. coli Fructose-1,6-bisphosphatase: Citrate, Fru-2,6-P2, and Mg2+ bound'''
'''E. coli Fructose-1,6-bisphosphatase: Citrate, Fru-2,6-P2, and Mg2+ bound'''
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[[Category: Hines, J K.]]
[[Category: Hines, J K.]]
[[Category: Honzatko, R B.]]
[[Category: Honzatko, R B.]]
[[Category: carbohydrate metabolism]]
[[Category: Carbohydrate metabolism]]
[[Category: cytoplasm]]
[[Category: Cytoplasm]]
[[Category: hydrolase]]
[[Category: Hydrolase]]
[[Category: magnesium]]
[[Category: Magnesium]]
[[Category: sugar phosphatase fold]]
[[Category: Sugar phosphatase fold]]
[[Category: tetramer]]
[[Category: Tetramer]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May  4 15:46:27 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:53:50 2008''

Revision as of 12:46, 4 May 2008

File:2qvr.jpg

Template:STRUCTURE 2qvr

E. coli Fructose-1,6-bisphosphatase: Citrate, Fru-2,6-P2, and Mg2+ bound


Overview

Fructose-1,6-bisphosphatase (FBPase) operates at a control point in mammalian gluconeogenesis, being inhibited synergistically by fructose 2,6-bisphosphate (Fru-2,6-P(2)) and AMP. AMP and Fru-2,6-P(2) bind to allosteric and active sites, respectively, but the mechanism responsible for AMP/Fru-2,6-P(2) synergy is unclear. Demonstrated here for the first time is a global conformational change in porcine FBPase induced by Fru-2,6-P(2) in the absence of AMP. The Fru-2,6-P(2) complex exhibits a subunit pair rotation of 13 degrees from the R-state (compared with the 15 degrees rotation of the T-state AMP complex) with active site loops in the disengaged conformation. A three-state thermodynamic model in which Fru-2,6-P(2) drives a conformational change to a T-like intermediate state can account for AMP/Fru-2,6-P(2) synergism in mammalian FBPases. AMP and Fru-2,6-P(2) are not synergistic inhibitors of the Type I FBPase from Escherichia coli, and consistent with that model, the complex of E. coli FBPase with Fru-2,6-P(2) remains in the R-state with dynamic loops in the engaged conformation. Evidently in porcine FBPase, the actions of AMP at the allosteric site and Fru-2,6-P(2) at the active site displace engaged dynamic loops by distinct mechanisms, resulting in similar quaternary end-states. Conceivably, Type I FBPases from all eukaryotes may undergo similar global conformational changes in response to Fru-2,6-P(2) ligation.

About this Structure

2QVR is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

Structures of mammalian and bacterial fructose-1,6-bisphosphatase reveal the basis for synergism in AMP/fructose 2,6-bisphosphate inhibition., Hines JK, Chen X, Nix JC, Fromm HJ, Honzatko RB, J Biol Chem. 2007 Dec 7;282(49):36121-31. Epub 2007 Oct 12. PMID:17933867 Page seeded by OCA on Sun May 4 15:46:27 2008

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